Magnesium in PDB 5ady: Cryo-Em Structures of the 50S Ribosome Subunit Bound with Hflx

The binding sites of Magnesium atom in the Cryo-Em Structures of the 50S Ribosome Subunit Bound with Hflx (pdb code 5ady). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structures of the 50S Ribosome Subunit Bound with Hflx, PDB code: 5ady:

Magnesium binding site 1 out of 1 in the Cryo-Em Structures of the 50S Ribosome Subunit Bound with Hflx


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structures of the 50S Ribosome Subunit Bound with Hflx within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg528 b:9.5 occ:1.00 O2B 6:GNP527 1.8 19.3 1.0 O1G 6:GNP527 1.9 19.1 1.0 O3G 6:GNP527 2.0 20.2 1.0 N 6:SER211 2.4 0.0 1.0 PG 6:GNP527 2.4 18.2 1.0 OG1 6:THR231 2.7 0.0 1.0 CB 6:LYS210 2.9 0.0 1.0 PB 6:GNP527 2.9 19.0 1.0 CA 6:SER211 3.1 0.0 1.0 C 6:LYS210 3.1 0.0 1.0 N3B 6:GNP527 3.1 18.3 1.0 CB 6:SER211 3.2 0.0 1.0 OD2 6:ASP251 3.2 0.0 1.0 CA 6:LYS210 3.4 0.0 1.0 N 6:LYS210 3.7 0.0 1.0 O2A 6:GNP527 3.7 19.1 1.0 CB 6:THR231 3.7 0.0 1.0 O1B 6:GNP527 3.8 21.0 1.0 O2G 6:GNP527 3.8 18.1 1.0 CG 6:LYS210 3.9 0.0 1.0 O1A 6:GNP527 4.0 20.6 1.0 O3A 6:GNP527 4.0 20.5 1.0 PA 6:GNP527 4.1 20.3 1.0 O 6:LYS210 4.1 0.0 1.0 CG 6:ASP251 4.2 0.0 1.0 OD1 6:ASP251 4.4 0.0 1.0 OG 6:SER211 4.5 0.0 1.0 C 6:SER211 4.5 0.0 1.0 C 6:GLY209 4.6 0.0 1.0 CG2 6:THR231 4.6 0.0 1.0 N 6:THR231 4.7 0.0 1.0 CA 6:THR231 4.8 0.0 1.0 O 6:THR252 4.9 0.0 1.0 C 6:ALA230 4.9 0.0 1.0 N 6:THR212 5.0 0.0 1.0

Y.Zhang, C.S.Mandava, W.Cao, X.Li, D.Zhang, N.Li, Y.Zhang, X.Zhang, Y.Qin, K.Mi, J.Lei, S.Sanyal, N.Gao. Hflx Is A Ribosome Splitting Factor Rescuing Stalled Ribosomes Under Stress Conditions Nat.Struct.Mol.Biol. V. 22 906 2015.
ISSN: ISSN 1545-9993
PubMed: 26458047
DOI: 10.1038/NSMB.3103