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Magnesium in PDB 5awm: The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins.

Enzymatic activity of The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins.

All present enzymatic activity of The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins.:
2.7.11.24;

Protein crystallography data

The structure of The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins., PDB code: 5awm was solved by P.Boonserm, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.28 / 1.79
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.486, 55.329, 126.717, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 22

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins. (pdb code 5awm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins., PDB code: 5awm:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5awm

Go back to Magnesium Binding Sites List in 5awm
Magnesium binding site 1 out of 2 in the The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:18.6
occ:1.00
 O2G A:ANP401 1.9 21.7 1.0
O A:HOH542 1.9 20.3 1.0
O1B A:ANP401 2.0 17.6 1.0
O1A A:ANP401 2.1 22.6 1.0
OD1 A:ASN154 2.1 19.3 1.0
O A:HOH538 2.2 22.2 1.0
PB A:ANP401 3.1 20.0 1.0
CG A:ASN154 3.2 16.2 1.0
PG A:ANP401 3.2 25.2 1.0
PA A:ANP401 3.3 18.6 1.0
O3A A:ANP401 3.5 16.9 1.0
ND2 A:ASN154 3.5 21.6 1.0
N3B A:ANP401 3.6 20.4 1.0
O A:HOH625 4.0 31.1 1.0
O1G A:ANP401 4.0 23.4 1.0
O5' A:ANP401 4.2 19.7 1.0
O A:HOH634 4.3 34.8 1.0
O3G A:ANP401 4.3 21.5 1.0
O2A A:ANP401 4.3 20.3 1.0
O A:HOH630 4.4 30.7 1.0
C5' A:ANP401 4.4 17.5 1.0
O2B A:ANP401 4.5 20.1 1.0
OG A:SER153 4.5 16.2 1.0
O A:SER153 4.5 17.1 1.0
CB A:ASN154 4.5 14.5 1.0
O A:HOH532 4.6 31.1 1.0
O A:HOH577 4.8 48.4 1.0
CA A:ASN154 4.8 12.2 1.0
C A:SER153 4.9 14.2 1.0
O3' A:ANP401 4.9 16.5 1.0

Magnesium binding site 2 out of 2 in 5awm

Go back to Magnesium Binding Sites List in 5awm
Magnesium binding site 2 out of 2 in the The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:33.3
occ:1.00
 O A:HOH570 1.8 33.4 1.0
O A:HOH581 2.1 34.5 1.0
O3G A:ANP401 2.2 21.5 1.0
O A:HOH532 2.4 31.1 1.0
OE1 A:GLU71 3.2 56.3 1.0
PG A:ANP401 3.4 25.2 1.0
O A:HOH625 4.0 31.1 1.0
NZ A:LYS53 4.0 18.5 1.0
O1G A:ANP401 4.0 23.4 1.0
CD A:GLU71 4.0 54.8 1.0
O2G A:ANP401 4.0 21.7 1.0
OE2 A:GLU71 4.1 39.3 1.0
NH1 A:ARG67 4.3 90.4 1.0
CB A:ASP167 4.3 21.0 1.0
N3B A:ANP401 4.5 20.4 1.0
OD2 A:ASP167 4.5 26.2 1.0
O A:HOH589 4.7 33.9 1.0
O A:HOH602 4.8 31.6 1.0
O A:HOH510 4.8 33.8 1.0
O A:HOH577 4.9 48.4 1.0

Reference:

S.Chimnaronk, J.Sitthiroongruang, K.Srisucharitpanit, M.Srisaisup, A.J.Ketterman, P.Boonserm. The Crystal Structure of Jnk From Drosophila Melanogaster Reveals An Evolutionarily Conserved Topology with That of Mammalian Jnk Proteins. Bmc Struct.Biol. V. 15 17 2015.
ISSN: ESSN 1472-6807
PubMed: 26377800
DOI: 10.1186/S12900-015-0045-1
Page generated: Sun Sep 29 00:56:55 2024

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