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Magnesium in PDB 5bo5: Structure of A Unique Atp Synthase Subunit Neqb From Nanoarcheaum Equitans

Protein crystallography data

The structure of Structure of A Unique Atp Synthase Subunit Neqb From Nanoarcheaum Equitans, PDB code: 5bo5 was solved by S.Mohanty, C.Jobichen, V.P.R.Chichili, J.Sivaraman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.78 / 2.81
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.229, 155.233, 177.451, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 25.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of A Unique Atp Synthase Subunit Neqb From Nanoarcheaum Equitans (pdb code 5bo5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of A Unique Atp Synthase Subunit Neqb From Nanoarcheaum Equitans, PDB code: 5bo5:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5bo5

Go back to Magnesium Binding Sites List in 5bo5
Magnesium binding site 1 out of 2 in the Structure of A Unique Atp Synthase Subunit Neqb From Nanoarcheaum Equitans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Unique Atp Synthase Subunit Neqb From Nanoarcheaum Equitans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:66.4
occ:1.00
N A:GLY137 3.3 39.1 1.0
OG1 A:THR281 3.6 42.7 1.0
OE2 A:GLU141 3.8 73.8 1.0
O A:LEU138 4.0 50.4 1.0
CA A:GLY137 4.1 41.3 1.0
CA A:PRO136 4.2 35.3 1.0
C A:PRO136 4.2 36.5 1.0
N A:LEU138 4.3 44.4 1.0
CG2 A:THR281 4.4 41.3 1.0
O A:PRO135 4.4 44.7 1.0
C A:GLY137 4.4 47.1 1.0
CB A:THR281 4.6 33.9 1.0
OG A:SER134 4.8 46.6 1.0
CD A:GLU141 4.9 75.4 1.0

Magnesium binding site 2 out of 2 in 5bo5

Go back to Magnesium Binding Sites List in 5bo5
Magnesium binding site 2 out of 2 in the Structure of A Unique Atp Synthase Subunit Neqb From Nanoarcheaum Equitans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Unique Atp Synthase Subunit Neqb From Nanoarcheaum Equitans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:52.2
occ:1.00
O B:SER323 3.2 41.5 1.0
O B:LEU321 3.8 46.2 1.0
CE1 B:HIS122 3.8 45.2 1.0
C B:SER323 4.4 35.0 1.0
CD1 B:LEU324 4.4 36.1 1.0
C B:LEU321 4.5 41.0 1.0
O B:LEU320 4.5 43.7 1.0
ND1 B:HIS122 4.6 45.9 1.0
CB B:LEU324 4.6 31.0 1.0
NE2 B:HIS122 4.7 36.1 1.0
CA B:LEU324 4.7 32.8 1.0
CA B:LEU321 5.0 38.9 1.0

Reference:

S.Mohanty, C.Jobichen, V.P.R.Chichili, A.Velazquez-Campoy, B.C.Low, C.W.V.Hogue, J.Sivaraman. Structural Basis For A Unique Atp Synthase Core Complex From Nanoarcheaum Equitans J.Biol.Chem. V. 290 27280 2015.
ISSN: ESSN 1083-351X
PubMed: 26370083
DOI: 10.1074/JBC.M115.677492
Page generated: Sun Sep 29 01:12:33 2024

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