Magnesium in PDB 5bvc: Crystal Structure of Lipomyces Starkeyi Levoglucosan Kinase Bound to Adp, Magnesium and Levoglucosan in An Alternate Orientation.

The structure of Crystal Structure of Lipomyces Starkeyi Levoglucosan Kinase Bound to Adp, Magnesium and Levoglucosan in An Alternate Orientation., PDB code: 5bvc was solved by J.P.Bacik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.27 / 2.00
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	70.250, 70.250, 264.190, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 23.2

The binding sites of Magnesium atom in the Crystal Structure of Lipomyces Starkeyi Levoglucosan Kinase Bound to Adp, Magnesium and Levoglucosan in An Alternate Orientation. (pdb code 5bvc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Lipomyces Starkeyi Levoglucosan Kinase Bound to Adp, Magnesium and Levoglucosan in An Alternate Orientation., PDB code: 5bvc:

Magnesium binding site 1 out of 1 in the Crystal Structure of Lipomyces Starkeyi Levoglucosan Kinase Bound to Adp, Magnesium and Levoglucosan in An Alternate Orientation.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Lipomyces Starkeyi Levoglucosan Kinase Bound to Adp, Magnesium and Levoglucosan in An Alternate Orientation. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:42.0 occ:1.00 O A:HOH623 2.2 35.5 1.0 O A:HOH638 2.3 39.8 1.0 OD2 A:ASP26 2.5 43.1 1.0 O2B A:ADP501 2.6 41.5 1.0 O2A A:ADP501 2.8 40.5 1.0 O A:HOH688 2.9 32.4 1.0 O A:HOH620 3.2 40.0 1.0 PB A:ADP501 3.4 49.5 1.0 O3B A:ADP501 3.5 34.1 1.0 CG A:ASP26 3.6 42.0 1.0 O3A A:ADP501 3.7 45.7 1.0 N A:GLY22 3.7 25.1 1.0 PA A:ADP501 3.9 54.7 1.0 OD1 A:ASP26 4.0 45.4 1.0 CA A:GLY22 4.0 21.9 1.0 CB A:SER24 4.1 41.2 1.0 O A:GLY27 4.1 28.1 1.0 OD2 A:ASP29 4.2 24.4 1.0 N A:ASP26 4.3 40.9 1.0 N A:MET25 4.4 38.2 1.0 C5' A:ADP501 4.4 48.7 1.0 N A:GLY27 4.5 36.5 1.0 O A:GLY22 4.5 25.4 1.0 C A:GLY22 4.5 30.7 1.0 O5' A:ADP501 4.6 53.2 1.0 OE1 A:GLU53 4.7 42.2 1.0 OG A:SER24 4.7 38.9 1.0 O A:HOH730 4.8 39.5 1.0 O1B A:ADP501 4.8 37.9 1.0 CB A:ASP26 4.9 39.6 1.0 C A:SER21 4.9 20.9 1.0 CA A:SER24 4.9 45.3 1.0 N A:SER24 5.0 42.4 1.0 CA A:MET25 5.0 33.6 1.0

J.P.Bacik, J.R.Klesmith, T.A.Whitehead, L.R.Jarboe, C.J.Unkefer, B.L.Mark, R.Michalczyk. Producing Glucose 6-Phosphate From Cellulosic Biomass: Structural Insights Into Levoglucosan Bioconversion. J.Biol.Chem. V. 290 26638 2015.
ISSN: ESSN 1083-351X
PubMed: 26354439
DOI: 10.1074/JBC.M115.674614