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Magnesium in PDB 5bxy: Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine

Protein crystallography data

The structure of Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine, PDB code: 5bxy was solved by K.B.Handing, C.Larowe, I.G.Shabalin, M.Stead, B.S.Hillerich, M.Ahmed, J.Bonanno, S.C.Almo, W.Minor, New York Structural Genomics Researchconsortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.574, 86.040, 85.057, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 18.8

Other elements in 5bxy:

The structure of Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine (pdb code 5bxy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine, PDB code: 5bxy:

Magnesium binding site 1 out of 1 in 5bxy

Go back to Magnesium Binding Sites List in 5bxy
Magnesium binding site 1 out of 1 in the Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Rna Methyltransferase From Salinibacter Ruber in Complex with S-Adenosyl-L-Homocysteine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg204

b:45.7
occ:1.00
O A:HOH357 2.1 34.9 1.0
O A:HOH438 2.1 33.9 1.0
O A:HOH441 2.2 37.1 1.0
O A:HOH330 2.2 29.8 1.0
O A:HOH435 2.4 44.3 1.0
O A:HOH376 2.6 24.6 1.0
OD1 A:ASP25 4.3 16.5 1.0
O A:ASP20 4.3 16.7 1.0
OD2 A:ASP25 4.5 20.9 1.0
O A:ALA19 4.5 18.2 1.0
O A:HOH387 4.5 32.5 1.0
O A:HOH328 4.8 32.5 1.0
CG A:ASP25 4.8 19.0 1.0
CB A:ASP20 4.9 20.1 1.0

Reference:

K.B.Handing, C.Larowe, I.G.Shabalin, M.Stead, B.S.Hillerich, M.Ahmed, J.Bonanno, S.C.Almo, W.Minor. Crystal Structure of Rna Methylase Family Protein From Salinibacterruber in Complex with S-Adenosyl-L-Homocysteine. To Be Published.
Page generated: Mon Dec 14 20:04:29 2020

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