Magnesium in PDB 5by0: Crystal Structure of Magnesium-Bound DUF89 Protein Saccharomyces Cerevisiae

The structure of Crystal Structure of Magnesium-Bound DUF89 Protein Saccharomyces Cerevisiae, PDB code: 5by0 was solved by B.Nocek, M.Cuff, H.Cui, X.Xu, A.Savchenko, A.Joachimiak, A.Yakunin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.40 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	54.407, 108.582, 88.234, 90.00, 97.04, 90.00
R / Rfree (%)	15.7 / 19.5

The binding sites of Magnesium atom in the Crystal Structure of Magnesium-Bound DUF89 Protein Saccharomyces Cerevisiae (pdb code 5by0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Magnesium-Bound DUF89 Protein Saccharomyces Cerevisiae, PDB code: 5by0:

Magnesium binding site 1 out of 1 in the Crystal Structure of Magnesium-Bound DUF89 Protein Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Magnesium-Bound DUF89 Protein Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:17.8 occ:1.00 OD1 A:ASP292 1.9 20.8 1.0 O A:HOH713 2.1 19.8 1.0 OD1 A:ASP254 2.1 21.9 1.0 O A:HOH850 2.1 20.9 1.0 OD1 A:ASN255 2.1 18.7 1.0 O A:HOH710 2.1 17.4 1.0 CG A:ASP292 3.0 20.4 1.0 CG A:ASP254 3.1 22.1 1.0 CG A:ASN255 3.2 21.7 1.0 OD2 A:ASP292 3.5 21.6 1.0 OD2 A:ASP254 3.6 27.9 1.0 ND2 A:ASN255 3.7 26.9 1.0 O A:HOH768 3.7 23.6 1.0 O A:HOH973 4.2 36.5 1.0 N A:ASN255 4.2 16.0 1.0 C A:ASP254 4.2 16.8 1.0 CB A:ASP292 4.3 17.8 1.0 CB A:ASN255 4.4 16.9 1.0 O A:MSE289 4.4 18.5 1.0 CB A:ASP254 4.4 19.2 1.0 CA A:ASN255 4.4 15.8 1.0 CA A:ASP292 4.4 18.4 1.0 N A:ASP292 4.4 17.1 1.0 O A:HOH883 4.5 42.2 1.0 CB A:MSE289 4.5 19.8 1.0 CA A:ASP254 4.6 16.6 1.0 O A:ASP254 4.6 17.7 1.0 C A:SER291 4.8 20.3 1.0 O A:HOH773 4.8 20.1 1.0 CB A:SER291 4.9 23.5 1.0

B.Nocek, M.Cuff, H.Cui, X.Xu, A.Savchenko, A.Joachimiak, A.Yakunin. Crystal Structure of Magnesium-Bound DUF89 Protein Saccharomyces Cerevisiae To Be Published.