Magnesium in PDB 5bz9: X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice.

The structure of X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice., PDB code: 5bz9 was solved by M.Saoji, P.J.Paukstelis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.51 / 2.10
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	25.989, 25.989, 121.531, 90.00, 90.00, 120.00
R / Rfree (%)	27.1 / 31.2

The binding sites of Magnesium atom in the X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice. (pdb code 5bz9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice., PDB code: 5bz9:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:61.2 occ:1.00 OP1 A:DG13 3.8 71.7 1.0 P A:DG13 4.9 66.7 1.0

Magnesium binding site 2 out of 2 in the X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:62.0 occ:1.00 C5 A:DG13 4.0 47.0 1.0 C6 A:DG13 4.0 46.6 1.0 O A:HOH212 4.1 61.2 1.0 C4 A:DG13 4.2 46.9 1.0 N1 A:DG13 4.2 42.1 1.0 N7 A:DG13 4.4 48.2 1.0 O6 A:DG13 4.4 47.5 1.0 C2 A:DG13 4.5 44.4 1.0 N3 A:DG13 4.5 44.2 1.0 N9 A:DG13 4.7 51.0 1.0 C8 A:DG13 4.8 48.4 1.0

M.Saoji, P.J.Paukstelis. Sequence-Dependent Structural Changes in A Self-Assembling Dna Oligonucleotide. Acta Crystallogr.,Sect.D V. 71 2471 2015.
ISSN: ESSN 1399-0047
PubMed: 26627654
DOI: 10.1107/S1399004715019598