Magnesium in PDB 5bzy: X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice.

The structure of X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice., PDB code: 5bzy was solved by M.Saoji, P.J.Paukstelis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.51 / 2.40
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	25.958, 25.958, 121.533, 90.00, 90.00, 120.00
R / Rfree (%)	24.5 / 31.3

The binding sites of Magnesium atom in the X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice. (pdb code 5bzy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice., PDB code: 5bzy:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:56.7 occ:1.00 OP1 A:DG13 2.9 66.1 1.0 P A:DG13 4.3 62.2 1.0 O5' A:DG13 4.7 59.4 1.0

Magnesium binding site 2 out of 2 in the X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Crystal Structure of A Continuously Hydrogen Bonded 14MER Dna Lattice. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:30.0 occ:1.00 C6 A:DG13 4.2 48.9 1.0 C5 A:DG13 4.3 50.4 1.0 N1 A:DG13 4.3 46.9 1.0 C4 A:DG13 4.5 49.7 1.0 C2 A:DG13 4.5 46.4 1.0 O6 A:DG13 4.6 49.6 1.0 N3 A:DG13 4.6 47.5 1.0 N7 A:DG13 4.8 52.6 1.0

M.Saoji, P.J.Paukstelis. Sequence-Dependent Structural Changes in A Self-Assembling Dna Oligonucleotide. Acta Crystallogr.,Sect.D V. 71 2471 2015.
ISSN: ESSN 1399-0047
PubMed: 26627654
DOI: 10.1107/S1399004715019598