Atomistry » Magnesium » PDB 5btm-5c25 » 5c0w
Atomistry »
  Magnesium »
    PDB 5btm-5c25 »
      5c0w »

Magnesium in PDB 5c0w: Structure of A 12-Subunit Nuclear Exosome Complex Bound to Single- Stranded Rna Substrates

Protein crystallography data

The structure of Structure of A 12-Subunit Nuclear Exosome Complex Bound to Single- Stranded Rna Substrates, PDB code: 5c0w was solved by D.L.Makino, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.09 / 4.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 195.380, 195.380, 463.650, 90.00, 90.00, 120.00
R / Rfree (%) 27.1 / 28.4

Other elements in 5c0w:

The structure of Structure of A 12-Subunit Nuclear Exosome Complex Bound to Single- Stranded Rna Substrates also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of A 12-Subunit Nuclear Exosome Complex Bound to Single- Stranded Rna Substrates (pdb code 5c0w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of A 12-Subunit Nuclear Exosome Complex Bound to Single- Stranded Rna Substrates, PDB code: 5c0w:

Magnesium binding site 1 out of 1 in 5c0w

Go back to Magnesium Binding Sites List in 5c0w
Magnesium binding site 1 out of 1 in the Structure of A 12-Subunit Nuclear Exosome Complex Bound to Single- Stranded Rna Substrates


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A 12-Subunit Nuclear Exosome Complex Bound to Single- Stranded Rna Substrates within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1101

b:0.7
occ:1.00
OP1 R:A-1 1.9 0.0 1.0
OD1 J:ASP543 2.3 0.9 1.0
O3' R:A-2 2.4 0.5 1.0
P R:A-1 2.6 0.1 1.0
CG J:ASP543 3.2 1.0 1.0
OD2 J:ASP543 3.3 0.6 1.0
OD1 J:ASP552 3.4 0.8 1.0
O5' R:A-1 3.5 0.0 1.0
OD2 J:ASP552 3.5 0.4 1.0
CG J:ASP552 3.6 0.6 1.0
N J:ASP552 3.7 0.5 1.0
C3' R:A-2 3.8 0.9 1.0
O2' R:A-2 3.9 0.6 1.0
OP2 R:A-1 3.9 0.4 1.0
N J:ASN551 3.9 0.5 1.0
O J:ASP552 4.0 0.1 1.0
O J:ILE542 4.2 0.6 1.0
C4' R:A-2 4.3 0.5 1.0
CG2 J:ILE550 4.3 0.9 1.0
CB J:ASN551 4.4 0.8 1.0
C2' R:A-2 4.4 0.7 1.0
CA J:ASN551 4.4 0.5 1.0
CA J:ASP552 4.5 0.7 1.0
CB J:ASP543 4.5 0.2 1.0
C J:ASN551 4.6 0.6 1.0
CB J:ASP552 4.7 0.9 1.0
C J:ASP552 4.7 0.9 1.0
C J:ILE550 4.7 0.5 1.0
CA J:ILE550 4.8 0.8 1.0
C J:ILE542 4.8 0.8 1.0
C5' R:A-1 4.9 0.2 1.0
CA J:ASP543 4.9 0.8 1.0

Reference:

D.L.Makino, B.Schuch, E.Stegmann, M.Baumgartner, C.Basquin, E.Conti. Rna Degradation Paths in A 12-Subunit Nuclear Exosome Complex. Nature V. 524 54 2015.
ISSN: ESSN 1476-4687
PubMed: 26222026
DOI: 10.1038/NATURE14865
Page generated: Mon Dec 14 20:04:52 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy