Magnesium in PDB 5c18: P97-DELTA709-728 in Complex with Atp-Gamma-S
Enzymatic activity of P97-DELTA709-728 in Complex with Atp-Gamma-S
All present enzymatic activity of P97-DELTA709-728 in Complex with Atp-Gamma-S:
3.6.4.6;
Protein crystallography data
The structure of P97-DELTA709-728 in Complex with Atp-Gamma-S, PDB code: 5c18
was solved by
P.Haenzelmann,
H.Schindelin,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
19.99 /
3.30
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
140.330,
180.059,
255.612,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
21.1 /
24.9
|
Other elements in 5c18:
The structure of P97-DELTA709-728 in Complex with Atp-Gamma-S also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Magnesium atom in the P97-DELTA709-728 in Complex with Atp-Gamma-S
(pdb code 5c18). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the
P97-DELTA709-728 in Complex with Atp-Gamma-S, PDB code: 5c18:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 12 in 5c18
Go back to
Magnesium Binding Sites List in 5c18
Magnesium binding site 1 out
of 12 in the P97-DELTA709-728 in Complex with Atp-Gamma-S
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg903
b:0.4
occ:1.00
|
O
|
A:HOH1001
|
2.1
|
0.5
|
1.0
|
|
O
|
A:HOH1003
|
2.1
|
1.0
|
1.0
|
|
O
|
A:HOH1002
|
2.1
|
93.0
|
1.0
|
|
OG1
|
A:THR252
|
2.1
|
72.8
|
1.0
|
|
O2G
|
A:AGS902
|
2.1
|
0.1
|
1.0
|
|
O2B
|
A:AGS902
|
2.1
|
83.4
|
1.0
|
|
HOG2
|
A:AGS902
|
2.8
|
0.9
|
1.0
|
|
PG
|
A:AGS902
|
2.9
|
0.5
|
1.0
|
|
O3G
|
A:AGS902
|
3.1
|
0.2
|
1.0
|
|
O3B
|
A:AGS902
|
3.2
|
0.8
|
1.0
|
|
PB
|
A:AGS902
|
3.2
|
81.5
|
1.0
|
|
CB
|
A:THR252
|
3.3
|
75.8
|
1.0
|
|
HB
|
A:THR252
|
3.4
|
90.9
|
1.0
|
|
H21
|
A:AGS902
|
3.4
|
0.6
|
1.0
|
|
OD2
|
A:ASP304
|
3.5
|
93.7
|
1.0
|
|
H
|
A:THR252
|
3.5
|
94.7
|
1.0
|
|
OD1
|
A:ASP304
|
3.6
|
91.2
|
1.0
|
|
O1A
|
A:AGS902
|
3.6
|
86.5
|
1.0
|
|
CG
|
A:ASP304
|
3.9
|
91.8
|
1.0
|
|
HG21
|
A:THR252
|
4.1
|
94.0
|
1.0
|
|
N
|
A:THR252
|
4.2
|
78.9
|
1.0
|
|
O3A
|
A:AGS902
|
4.2
|
81.8
|
1.0
|
|
CG2
|
A:THR252
|
4.2
|
78.4
|
1.0
|
|
PA
|
A:AGS902
|
4.2
|
82.4
|
1.0
|
|
O1B
|
A:AGS902
|
4.2
|
73.2
|
1.0
|
|
O2A
|
A:AGS902
|
4.2
|
84.8
|
1.0
|
|
HZ3
|
A:LYS251
|
4.3
|
0.9
|
1.0
|
|
CA
|
A:THR252
|
4.3
|
78.5
|
1.0
|
|
HB2
|
A:LYS251
|
4.5
|
99.8
|
1.0
|
|
HG23
|
A:THR252
|
4.5
|
94.0
|
1.0
|
|
HA
|
A:THR252
|
4.7
|
94.3
|
1.0
|
|
S1G
|
A:AGS902
|
4.7
|
1.0
|
1.0
|
|
HZ2
|
A:LYS251
|
4.7
|
0.9
|
1.0
|
|
HG3
|
A:GLU305
|
4.8
|
99.2
|
1.0
|
|
HG2
|
A:GLU305
|
4.8
|
99.2
|
1.0
|
|
NZ
|
A:LYS251
|
4.9
|
93.2
|
1.0
|
|
HZ1
|
A:LYS251
|
4.9
|
0.9
|
1.0
|
|
Magnesium binding site 2 out
of 12 in 5c18
Go back to
Magnesium Binding Sites List in 5c18
Magnesium binding site 2 out
of 12 in the P97-DELTA709-728 in Complex with Atp-Gamma-S
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg904
b:76.3
occ:1.00
|
O1B
|
A:AGS901
|
2.0
|
82.3
|
1.0
|
|
O2G
|
A:AGS901
|
2.0
|
78.5
|
1.0
|
|
O1A
|
A:AGS901
|
2.0
|
82.8
|
1.0
|
|
O
|
A:HOH1004
|
2.1
|
0.3
|
1.0
|
|
O
|
A:HOH1005
|
2.1
|
59.1
|
1.0
|
|
OG1
|
A:THR525
|
2.1
|
72.3
|
1.0
|
|
HOG2
|
A:AGS901
|
2.3
|
94.2
|
1.0
|
|
HB
|
A:THR525
|
3.0
|
84.0
|
1.0
|
|
CB
|
A:THR525
|
3.1
|
70.0
|
1.0
|
|
PB
|
A:AGS901
|
3.3
|
75.4
|
1.0
|
|
PA
|
A:AGS901
|
3.3
|
82.9
|
1.0
|
|
PG
|
A:AGS901
|
3.4
|
78.2
|
1.0
|
|
H
|
A:THR525
|
3.5
|
83.8
|
1.0
|
|
OD2
|
A:ASP577
|
3.6
|
68.0
|
1.0
|
|
H21
|
A:AGS901
|
3.7
|
95.8
|
1.0
|
|
O3B
|
A:AGS901
|
3.8
|
0.7
|
1.0
|
|
O3A
|
A:AGS901
|
3.8
|
78.5
|
1.0
|
|
HG21
|
A:THR525
|
3.8
|
84.7
|
1.0
|
|
O2A
|
A:AGS901
|
3.9
|
86.3
|
1.0
|
|
CG2
|
A:THR525
|
4.0
|
70.6
|
1.0
|
|
OD1
|
A:ASP577
|
4.1
|
69.2
|
1.0
|
|
O3G
|
A:AGS901
|
4.1
|
79.8
|
1.0
|
|
N
|
A:THR525
|
4.1
|
69.8
|
1.0
|
|
CA
|
A:THR525
|
4.2
|
72.8
|
1.0
|
|
CG
|
A:ASP577
|
4.3
|
66.4
|
1.0
|
|
H5'1
|
A:AGS901
|
4.3
|
0.1
|
1.0
|
|
HG23
|
A:THR525
|
4.5
|
84.7
|
1.0
|
|
O2B
|
A:AGS901
|
4.5
|
77.7
|
1.0
|
|
O5'
|
A:AGS901
|
4.5
|
86.5
|
1.0
|
|
HB2
|
A:LYS524
|
4.6
|
76.5
|
1.0
|
|
HA
|
A:THR525
|
4.6
|
87.3
|
1.0
|
|
HD2
|
B:ARG635
|
4.6
|
88.1
|
1.0
|
|
H5'2
|
A:AGS901
|
4.6
|
0.1
|
1.0
|
|
C5'
|
A:AGS901
|
4.7
|
86.8
|
1.0
|
|
HG22
|
A:THR525
|
4.8
|
84.7
|
1.0
|
|
S1G
|
A:AGS901
|
4.8
|
92.9
|
1.0
|
|
HG2
|
A:GLU578
|
4.9
|
0.0
|
1.0
|
|
HG3
|
A:GLU578
|
5.0
|
0.0
|
1.0
|
|
Magnesium binding site 3 out
of 12 in 5c18
Go back to
Magnesium Binding Sites List in 5c18
Magnesium binding site 3 out
of 12 in the P97-DELTA709-728 in Complex with Atp-Gamma-S
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg903
b:0.9
occ:1.00
|
O2G
|
B:AGS902
|
2.0
|
0.2
|
1.0
|
|
O2B
|
B:AGS902
|
2.0
|
58.9
|
1.0
|
|
O
|
B:HOH1001
|
2.1
|
0.2
|
1.0
|
|
O
|
B:HOH1002
|
2.1
|
0.6
|
1.0
|
|
O
|
B:HOH1003
|
2.1
|
71.6
|
1.0
|
|
OG1
|
B:THR252
|
2.1
|
61.2
|
1.0
|
|
HOG2
|
B:AGS902
|
2.3
|
0.3
|
1.0
|
|
HB
|
B:THR252
|
3.0
|
71.2
|
1.0
|
|
CB
|
B:THR252
|
3.1
|
59.4
|
1.0
|
|
OD2
|
B:ASP304
|
3.3
|
94.8
|
1.0
|
|
PB
|
B:AGS902
|
3.3
|
56.1
|
1.0
|
|
PG
|
B:AGS902
|
3.3
|
77.1
|
1.0
|
|
OD1
|
B:ASP304
|
3.4
|
98.7
|
1.0
|
|
H
|
B:THR252
|
3.5
|
72.4
|
1.0
|
|
O2A
|
B:AGS902
|
3.7
|
61.6
|
1.0
|
|
O3B
|
B:AGS902
|
3.7
|
0.2
|
1.0
|
|
CG
|
B:ASP304
|
3.8
|
91.4
|
1.0
|
|
HG21
|
B:THR252
|
3.9
|
73.0
|
1.0
|
|
O3A
|
B:AGS902
|
3.9
|
0.6
|
1.0
|
|
O3G
|
B:AGS902
|
4.0
|
0.2
|
1.0
|
|
CG2
|
B:THR252
|
4.1
|
60.9
|
1.0
|
|
N
|
B:THR252
|
4.1
|
60.4
|
1.0
|
|
CA
|
B:THR252
|
4.2
|
59.8
|
1.0
|
|
PA
|
B:AGS902
|
4.3
|
57.2
|
1.0
|
|
HZ2
|
B:LYS251
|
4.4
|
0.8
|
1.0
|
|
O1B
|
B:AGS902
|
4.5
|
55.6
|
1.0
|
|
O1A
|
B:AGS902
|
4.5
|
58.5
|
1.0
|
|
HG23
|
B:THR252
|
4.5
|
73.0
|
1.0
|
|
HA
|
B:THR252
|
4.5
|
71.7
|
1.0
|
|
HB2
|
B:LYS251
|
4.7
|
75.4
|
1.0
|
|
H21
|
B:AGS902
|
4.7
|
0.6
|
1.0
|
|
HG3
|
B:GLU305
|
4.8
|
0.0
|
1.0
|
|
S1G
|
B:AGS902
|
4.8
|
0.7
|
1.0
|
|
HZ1
|
B:LYS251
|
4.9
|
0.8
|
1.0
|
|
HG22
|
B:THR252
|
4.9
|
73.0
|
1.0
|
|
HG2
|
B:GLU305
|
4.9
|
0.0
|
1.0
|
|
Magnesium binding site 4 out
of 12 in 5c18
Go back to
Magnesium Binding Sites List in 5c18
Magnesium binding site 4 out
of 12 in the P97-DELTA709-728 in Complex with Atp-Gamma-S
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg904
b:87.0
occ:1.00
|
O2G
|
B:AGS901
|
2.0
|
57.8
|
1.0
|
|
O2B
|
B:AGS901
|
2.1
|
75.4
|
1.0
|
|
OG1
|
B:THR525
|
2.1
|
68.3
|
1.0
|
|
O
|
B:HOH1004
|
2.1
|
88.4
|
1.0
|
|
O2A
|
B:AGS901
|
2.1
|
78.7
|
1.0
|
|
O
|
B:HOH1005
|
2.1
|
65.0
|
1.0
|
|
HOG2
|
B:AGS901
|
2.2
|
69.3
|
1.0
|
|
HB
|
B:THR525
|
3.2
|
79.3
|
1.0
|
|
CB
|
B:THR525
|
3.2
|
66.0
|
1.0
|
|
PB
|
B:AGS901
|
3.2
|
73.9
|
1.0
|
|
PA
|
B:AGS901
|
3.3
|
76.6
|
1.0
|
|
PG
|
B:AGS901
|
3.4
|
86.8
|
1.0
|
|
H
|
B:THR525
|
3.6
|
79.7
|
1.0
|
|
O3A
|
B:AGS901
|
3.7
|
93.5
|
1.0
|
|
O3B
|
B:AGS901
|
3.7
|
62.6
|
1.0
|
|
OD2
|
B:ASP577
|
3.8
|
72.7
|
1.0
|
|
O1A
|
B:AGS901
|
3.8
|
73.3
|
1.0
|
|
HG21
|
B:THR525
|
3.9
|
82.8
|
1.0
|
|
CG2
|
B:THR525
|
4.1
|
69.0
|
1.0
|
|
N
|
B:THR525
|
4.2
|
66.5
|
1.0
|
|
H21
|
B:AGS901
|
4.2
|
0.9
|
1.0
|
|
HE
|
C:ARG635
|
4.2
|
0.8
|
1.0
|
|
CA
|
B:THR525
|
4.3
|
65.4
|
1.0
|
|
O3G
|
B:AGS901
|
4.3
|
93.3
|
1.0
|
|
OD1
|
B:ASP577
|
4.3
|
76.1
|
1.0
|
|
H5'1
|
B:AGS901
|
4.5
|
0.5
|
1.0
|
|
HG23
|
B:THR525
|
4.5
|
82.8
|
1.0
|
|
CG
|
B:ASP577
|
4.5
|
76.3
|
1.0
|
|
O1B
|
B:AGS901
|
4.5
|
72.2
|
1.0
|
|
O5'
|
B:AGS901
|
4.5
|
0.9
|
1.0
|
|
HA
|
B:THR525
|
4.6
|
78.5
|
1.0
|
|
S1G
|
B:AGS901
|
4.7
|
96.3
|
1.0
|
|
HB2
|
B:LYS524
|
4.8
|
91.0
|
1.0
|
|
HG22
|
B:THR525
|
4.9
|
82.8
|
1.0
|
|
HD2
|
C:ARG635
|
5.0
|
0.3
|
1.0
|
|
Magnesium binding site 5 out
of 12 in 5c18
Go back to
Magnesium Binding Sites List in 5c18
Magnesium binding site 5 out
of 12 in the P97-DELTA709-728 in Complex with Atp-Gamma-S
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg903
b:0.8
occ:1.00
|
O2G
|
C:AGS902
|
2.1
|
0.2
|
1.0
|
|
O
|
C:HOH1002
|
2.1
|
0.2
|
1.0
|
|
O
|
C:HOH1001
|
2.1
|
95.7
|
1.0
|
|
OG1
|
C:THR252
|
2.1
|
69.2
|
1.0
|
|
O
|
C:HOH1005
|
2.1
|
72.2
|
1.0
|
|
O2B
|
C:AGS902
|
2.1
|
64.6
|
1.0
|
|
HOG2
|
C:AGS902
|
2.7
|
0.9
|
1.0
|
|
PG
|
C:AGS902
|
3.2
|
99.5
|
1.0
|
|
PB
|
C:AGS902
|
3.2
|
67.9
|
1.0
|
|
O3B
|
C:AGS902
|
3.3
|
0.8
|
1.0
|
|
CB
|
C:THR252
|
3.3
|
67.2
|
1.0
|
|
HB
|
C:THR252
|
3.3
|
80.7
|
1.0
|
|
H
|
C:THR252
|
3.4
|
73.0
|
1.0
|
|
OD1
|
C:ASP304
|
3.4
|
78.0
|
1.0
|
|
OD2
|
C:ASP304
|
3.5
|
86.1
|
1.0
|
|
CG
|
C:ASP304
|
3.9
|
79.0
|
1.0
|
|
O2A
|
C:AGS902
|
3.9
|
66.8
|
1.0
|
|
O3G
|
C:AGS902
|
4.0
|
65.9
|
1.0
|
|
N
|
C:THR252
|
4.1
|
60.8
|
1.0
|
|
O1B
|
C:AGS902
|
4.1
|
64.6
|
1.0
|
|
HG21
|
C:THR252
|
4.1
|
82.1
|
1.0
|
|
CA
|
C:THR252
|
4.2
|
61.0
|
1.0
|
|
CG2
|
C:THR252
|
4.3
|
68.4
|
1.0
|
|
O3A
|
C:AGS902
|
4.4
|
0.1
|
1.0
|
|
HB2
|
C:LYS251
|
4.4
|
71.1
|
1.0
|
|
HZ1
|
C:LYS251
|
4.5
|
89.0
|
1.0
|
|
PA
|
C:AGS902
|
4.5
|
64.9
|
1.0
|
|
O1A
|
C:AGS902
|
4.5
|
67.2
|
1.0
|
|
HA
|
C:THR252
|
4.5
|
73.2
|
1.0
|
|
HG23
|
C:THR252
|
4.6
|
82.1
|
1.0
|
|
H21
|
C:AGS902
|
4.7
|
79.1
|
1.0
|
|
HG2
|
C:GLU305
|
4.7
|
85.2
|
1.0
|
|
S1G
|
C:AGS902
|
4.7
|
0.0
|
1.0
|
|
HB1
|
C:ALA346
|
4.8
|
86.0
|
1.0
|
|
HG3
|
C:GLU305
|
4.9
|
85.2
|
1.0
|
|
Magnesium binding site 6 out
of 12 in 5c18
Go back to
Magnesium Binding Sites List in 5c18
Magnesium binding site 6 out
of 12 in the P97-DELTA709-728 in Complex with Atp-Gamma-S
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg904
b:0.7
occ:1.00
|
O
|
C:HOH1003
|
2.0
|
0.7
|
1.0
|
|
O2B
|
C:AGS901
|
2.0
|
0.7
|
1.0
|
|
O2G
|
C:AGS901
|
2.0
|
0.0
|
1.0
|
|
OG1
|
C:THR525
|
2.1
|
86.8
|
1.0
|
|
O2A
|
C:AGS901
|
2.1
|
91.1
|
1.0
|
|
O
|
C:HOH1004
|
2.1
|
99.6
|
1.0
|
|
HOG2
|
C:AGS901
|
2.5
|
0.4
|
1.0
|
|
PB
|
C:AGS901
|
3.2
|
0.4
|
1.0
|
|
CB
|
C:THR525
|
3.3
|
87.9
|
1.0
|
|
PA
|
C:AGS901
|
3.3
|
86.1
|
1.0
|
|
PG
|
C:AGS901
|
3.3
|
0.6
|
1.0
|
|
HB
|
C:THR525
|
3.4
|
0.5
|
1.0
|
|
H
|
C:THR525
|
3.4
|
98.4
|
1.0
|
|
O3B
|
C:AGS901
|
3.6
|
0.4
|
1.0
|
|
O3A
|
C:AGS901
|
3.7
|
0.9
|
1.0
|
|
OD2
|
C:ASP577
|
3.8
|
85.9
|
1.0
|
|
O1A
|
C:AGS901
|
3.9
|
87.6
|
1.0
|
|
N
|
C:THR525
|
4.1
|
82.0
|
1.0
|
|
OD1
|
C:ASP577
|
4.1
|
88.2
|
1.0
|
|
HG21
|
C:THR525
|
4.2
|
0.9
|
1.0
|
|
H5'1
|
C:AGS901
|
4.2
|
0.8
|
1.0
|
|
CA
|
C:THR525
|
4.2
|
85.6
|
1.0
|
|
HE
|
D:ARG635
|
4.3
|
0.2
|
1.0
|
|
CG2
|
C:THR525
|
4.3
|
90.8
|
1.0
|
|
S1G
|
C:AGS901
|
4.3
|
0.5
|
1.0
|
|
CG
|
C:ASP577
|
4.4
|
88.6
|
1.0
|
|
O1B
|
C:AGS901
|
4.5
|
0.7
|
1.0
|
|
HB2
|
C:LYS524
|
4.5
|
0.9
|
1.0
|
|
O3G
|
C:AGS901
|
4.5
|
59.3
|
1.0
|
|
O5'
|
C:AGS901
|
4.5
|
95.6
|
1.0
|
|
HG23
|
C:THR525
|
4.6
|
0.9
|
1.0
|
|
HA
|
C:THR525
|
4.6
|
0.7
|
1.0
|
|
HD2
|
D:ARG635
|
4.7
|
0.3
|
1.0
|
|
C5'
|
C:AGS901
|
4.7
|
97.3
|
1.0
|
|
H5'2
|
C:AGS901
|
4.7
|
0.8
|
1.0
|
|
H
|
C:LYS524
|
5.0
|
0.3
|
1.0
|
|
HG2
|
C:GLU578
|
5.0
|
0.6
|
1.0
|
|
Magnesium binding site 7 out
of 12 in 5c18
Go back to
Magnesium Binding Sites List in 5c18
Magnesium binding site 7 out
of 12 in the P97-DELTA709-728 in Complex with Atp-Gamma-S
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg903
b:0.3
occ:1.00
|
O2G
|
D:AGS902
|
2.1
|
88.9
|
1.0
|
|
O
|
D:HOH1001
|
2.1
|
92.8
|
1.0
|
|
O
|
D:HOH1004
|
2.1
|
1.0
|
1.0
|
|
O
|
D:HOH1002
|
2.1
|
74.0
|
1.0
|
|
OG1
|
D:THR252
|
2.1
|
87.9
|
1.0
|
|
O2B
|
D:AGS902
|
2.1
|
87.2
|
1.0
|
|
HOG2
|
D:AGS902
|
2.7
|
0.7
|
1.0
|
|
PG
|
D:AGS902
|
3.2
|
0.9
|
1.0
|
|
PB
|
D:AGS902
|
3.2
|
85.9
|
1.0
|
|
CB
|
D:THR252
|
3.3
|
84.4
|
1.0
|
|
HB
|
D:THR252
|
3.3
|
0.3
|
1.0
|
|
O3B
|
D:AGS902
|
3.3
|
0.7
|
1.0
|
|
H
|
D:THR252
|
3.3
|
93.5
|
1.0
|
|
OD1
|
D:ASP304
|
3.5
|
93.7
|
1.0
|
|
O2A
|
D:AGS902
|
3.6
|
90.8
|
1.0
|
|
OD2
|
D:ASP304
|
3.7
|
0.0
|
1.0
|
|
O3G
|
D:AGS902
|
3.8
|
86.8
|
1.0
|
|
N
|
D:THR252
|
4.0
|
77.9
|
1.0
|
|
CG
|
D:ASP304
|
4.0
|
94.7
|
1.0
|
|
H21
|
D:AGS902
|
4.2
|
0.1
|
1.0
|
|
HG21
|
D:THR252
|
4.2
|
0.3
|
1.0
|
|
CA
|
D:THR252
|
4.2
|
79.3
|
1.0
|
|
O1B
|
D:AGS902
|
4.2
|
79.2
|
1.0
|
|
HB2
|
D:LYS251
|
4.2
|
91.7
|
1.0
|
|
O3A
|
D:AGS902
|
4.3
|
89.0
|
1.0
|
|
PA
|
D:AGS902
|
4.3
|
89.4
|
1.0
|
|
O1A
|
D:AGS902
|
4.3
|
90.2
|
1.0
|
|
CG2
|
D:THR252
|
4.3
|
89.4
|
1.0
|
|
HA
|
D:THR252
|
4.6
|
95.1
|
1.0
|
|
HE2
|
D:LYS251
|
4.6
|
97.2
|
1.0
|
|
HG23
|
D:THR252
|
4.6
|
0.3
|
1.0
|
|
S1G
|
D:AGS902
|
4.8
|
0.3
|
1.0
|
|
H
|
D:LYS251
|
4.9
|
99.0
|
1.0
|
|
HG3
|
D:GLU305
|
5.0
|
93.3
|
1.0
|
|
Magnesium binding site 8 out
of 12 in 5c18
Go back to
Magnesium Binding Sites List in 5c18
Magnesium binding site 8 out
of 12 in the P97-DELTA709-728 in Complex with Atp-Gamma-S
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg904
b:99.9
occ:1.00
|
O2G
|
D:AGS901
|
2.0
|
0.5
|
1.0
|
|
O2B
|
D:AGS901
|
2.0
|
85.4
|
1.0
|
|
O
|
D:HOH1003
|
2.1
|
0.8
|
1.0
|
|
O2A
|
D:AGS901
|
2.1
|
94.1
|
1.0
|
|
OG1
|
D:THR525
|
2.1
|
93.2
|
1.0
|
|
O
|
D:HOH1005
|
2.1
|
0.5
|
1.0
|
|
HOG2
|
D:AGS901
|
2.5
|
0.3
|
1.0
|
|
PB
|
D:AGS901
|
3.3
|
86.2
|
1.0
|
|
CB
|
D:THR525
|
3.3
|
93.9
|
1.0
|
|
HB
|
D:THR525
|
3.3
|
0.7
|
1.0
|
|
PG
|
D:AGS901
|
3.4
|
93.7
|
1.0
|
|
PA
|
D:AGS901
|
3.4
|
93.9
|
1.0
|
|
OD2
|
D:ASP577
|
3.5
|
0.8
|
1.0
|
|
H
|
D:THR525
|
3.5
|
0.8
|
1.0
|
|
O3B
|
D:AGS901
|
3.7
|
0.7
|
1.0
|
|
O3A
|
D:AGS901
|
3.8
|
0.7
|
1.0
|
|
O1A
|
D:AGS901
|
4.0
|
93.6
|
1.0
|
|
HG21
|
D:THR525
|
4.1
|
0.2
|
1.0
|
|
N
|
D:THR525
|
4.1
|
99.0
|
1.0
|
|
H5'1
|
D:AGS901
|
4.2
|
0.3
|
1.0
|
|
OD1
|
D:ASP577
|
4.2
|
0.3
|
1.0
|
|
CG2
|
D:THR525
|
4.2
|
92.6
|
1.0
|
|
CG
|
D:ASP577
|
4.3
|
0.6
|
1.0
|
|
CA
|
D:THR525
|
4.3
|
95.0
|
1.0
|
|
S1G
|
D:AGS901
|
4.5
|
1.0
|
1.0
|
|
O3G
|
D:AGS901
|
4.5
|
70.2
|
1.0
|
|
O1B
|
D:AGS901
|
4.5
|
86.7
|
1.0
|
|
HG23
|
D:THR525
|
4.5
|
0.2
|
1.0
|
|
O5'
|
D:AGS901
|
4.6
|
99.2
|
1.0
|
|
HB2
|
D:LYS524
|
4.6
|
0.3
|
1.0
|
|
H5'2
|
D:AGS901
|
4.7
|
0.3
|
1.0
|
|
HA
|
D:THR525
|
4.7
|
0.1
|
1.0
|
|
C5'
|
D:AGS901
|
4.7
|
0.1
|
1.0
|
|
HD3
|
E:ARG635
|
4.9
|
92.8
|
1.0
|
|
HG2
|
D:GLU578
|
5.0
|
0.3
|
1.0
|
|
Magnesium binding site 9 out
of 12 in 5c18
Go back to
Magnesium Binding Sites List in 5c18
Magnesium binding site 9 out
of 12 in the P97-DELTA709-728 in Complex with Atp-Gamma-S
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg903
b:81.1
occ:1.00
|
O
|
E:HOH1002
|
2.1
|
0.3
|
1.0
|
|
O
|
E:HOH1004
|
2.1
|
0.7
|
1.0
|
|
O
|
E:HOH1001
|
2.1
|
84.2
|
1.0
|
|
O2G
|
E:AGS902
|
2.1
|
0.7
|
1.0
|
|
OG1
|
E:THR252
|
2.1
|
82.5
|
1.0
|
|
O2B
|
E:AGS902
|
2.1
|
89.3
|
1.0
|
|
HOG2
|
E:AGS902
|
2.7
|
0.2
|
1.0
|
|
O3B
|
E:AGS902
|
3.1
|
0.6
|
1.0
|
|
PG
|
E:AGS902
|
3.1
|
97.9
|
1.0
|
|
PB
|
E:AGS902
|
3.1
|
87.7
|
1.0
|
|
CB
|
E:THR252
|
3.3
|
82.0
|
1.0
|
|
O1A
|
E:AGS902
|
3.3
|
0.1
|
1.0
|
|
H
|
E:THR252
|
3.4
|
97.9
|
1.0
|
|
OD1
|
E:ASP304
|
3.4
|
71.5
|
1.0
|
|
HB
|
E:THR252
|
3.4
|
98.3
|
1.0
|
|
OD2
|
E:ASP304
|
3.4
|
79.3
|
1.0
|
|
CG
|
E:ASP304
|
3.8
|
74.9
|
1.0
|
|
O3G
|
E:AGS902
|
3.9
|
0.8
|
1.0
|
|
HZ3
|
E:LYS251
|
4.0
|
95.8
|
1.0
|
|
N
|
E:THR252
|
4.0
|
81.6
|
1.0
|
|
O1B
|
E:AGS902
|
4.1
|
81.4
|
1.0
|
|
O3A
|
E:AGS902
|
4.2
|
0.3
|
1.0
|
|
HB2
|
E:LYS251
|
4.2
|
85.8
|
1.0
|
|
HG21
|
E:THR252
|
4.2
|
99.9
|
1.0
|
|
CA
|
E:THR252
|
4.2
|
83.0
|
1.0
|
|
PA
|
E:AGS902
|
4.3
|
0.3
|
1.0
|
|
CG2
|
E:THR252
|
4.3
|
83.3
|
1.0
|
|
H21
|
E:AGS902
|
4.4
|
0.5
|
1.0
|
|
HA
|
E:THR252
|
4.5
|
99.5
|
1.0
|
|
HG23
|
E:THR252
|
4.6
|
99.9
|
1.0
|
|
S1G
|
E:AGS902
|
4.7
|
0.1
|
1.0
|
|
NZ
|
E:LYS251
|
4.7
|
79.8
|
1.0
|
|
HZ2
|
E:LYS251
|
4.7
|
95.8
|
1.0
|
|
HD22
|
E:ASN348
|
4.7
|
0.9
|
1.0
|
|
HG3
|
E:GLU305
|
4.8
|
0.3
|
1.0
|
|
HG2
|
E:GLU305
|
4.8
|
0.3
|
1.0
|
|
O2A
|
E:AGS902
|
4.8
|
0.4
|
1.0
|
|
HB1
|
E:ALA346
|
4.9
|
0.6
|
1.0
|
|
HZ1
|
E:LYS251
|
4.9
|
95.8
|
1.0
|
|
HB3
|
E:ALA346
|
4.9
|
0.6
|
1.0
|
|
Magnesium binding site 10 out
of 12 in 5c18
Go back to
Magnesium Binding Sites List in 5c18
Magnesium binding site 10 out
of 12 in the P97-DELTA709-728 in Complex with Atp-Gamma-S
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of P97-DELTA709-728 in Complex with Atp-Gamma-S within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg904
b:96.5
occ:1.00
|
O2G
|
E:AGS901
|
2.0
|
0.9
|
1.0
|
|
O2B
|
E:AGS901
|
2.1
|
97.1
|
1.0
|
|
OG1
|
E:THR525
|
2.1
|
85.2
|
1.0
|
|
O
|
E:HOH1003
|
2.1
|
0.1
|
1.0
|
|
O1A
|
E:AGS901
|
2.1
|
88.3
|
1.0
|
|
O
|
E:HOH1005
|
2.1
|
88.7
|
1.0
|
|
HOG2
|
E:AGS901
|
2.5
|
0.3
|
1.0
|
|
PB
|
E:AGS901
|
3.3
|
95.9
|
1.0
|
|
PG
|
E:AGS901
|
3.3
|
99.5
|
1.0
|
|
CB
|
E:THR525
|
3.3
|
89.0
|
1.0
|
|
PA
|
E:AGS901
|
3.4
|
87.7
|
1.0
|
|
HB
|
E:THR525
|
3.5
|
0.8
|
1.0
|
|
H
|
E:THR525
|
3.5
|
0.9
|
1.0
|
|
OD2
|
E:ASP577
|
3.7
|
88.5
|
1.0
|
|
O3B
|
E:AGS901
|
3.7
|
0.1
|
1.0
|
|
O3A
|
E:AGS901
|
3.8
|
0.3
|
1.0
|
|
O2A
|
E:AGS901
|
3.9
|
87.8
|
1.0
|
|
HG21
|
E:THR525
|
4.1
|
0.7
|
1.0
|
|
N
|
E:THR525
|
4.1
|
92.4
|
1.0
|
|
OD1
|
E:ASP577
|
4.2
|
87.3
|
1.0
|
|
S1G
|
E:AGS901
|
4.3
|
0.6
|
1.0
|
|
CG2
|
E:THR525
|
4.3
|
90.5
|
1.0
|
|
CA
|
E:THR525
|
4.3
|
90.8
|
1.0
|
|
H5'1
|
E:AGS901
|
4.3
|
97.0
|
1.0
|
|
CG
|
E:ASP577
|
4.4
|
85.3
|
1.0
|
|
O1B
|
E:AGS901
|
4.5
|
94.5
|
1.0
|
|
HB2
|
E:LYS524
|
4.5
|
95.9
|
1.0
|
|
O3G
|
E:AGS901
|
4.5
|
0.3
|
1.0
|
|
HG23
|
E:THR525
|
4.5
|
0.7
|
1.0
|
|
O5'
|
E:AGS901
|
4.6
|
79.0
|
1.0
|
|
HA
|
E:THR525
|
4.6
|
0.9
|
1.0
|
|
C5'
|
E:AGS901
|
4.8
|
80.8
|
1.0
|
|
H5'2
|
E:AGS901
|
4.8
|
97.0
|
1.0
|
|
HD3
|
F:ARG635
|
4.8
|
86.3
|
1.0
|
|
HG2
|
E:GLU578
|
4.9
|
0.9
|
1.0
|
|
HG3
|
E:GLU578
|
4.9
|
0.9
|
1.0
|
|
Reference:
P.Hanzelmann,
H.Schindelin.
Structural Basis of Atp Hydrolysis and Intersubunit Signaling in the Aaa+ Atpase P97. Structure V. 24 127 2016.
ISSN: ISSN 0969-2126
PubMed: 26712278
DOI: 10.1016/J.STR.2015.10.026
Page generated: Mon Dec 14 20:04:58 2020
|
