Atomistry » Magnesium » PDB 5c28-5ca0 » 5c2j
Atomistry »
  Magnesium »
    PDB 5c28-5ca0 »
      5c2j »

Magnesium in PDB 5c2j: Complex Structure of the Gap Domain of Mgcracgap and CDC42

Protein crystallography data

The structure of Complex Structure of the Gap Domain of Mgcracgap and CDC42, PDB code: 5c2j was solved by K.Murayama, M.Kato-Murayama, T.Hosaka, T.Kitamura, S.Yokoyama, M.Shirouzu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.39 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 43.324, 74.237, 55.423, 90.00, 96.67, 90.00
R / Rfree (%) 19.8 / 26.3

Other elements in 5c2j:

The structure of Complex Structure of the Gap Domain of Mgcracgap and CDC42 also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Aluminium (Al) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Complex Structure of the Gap Domain of Mgcracgap and CDC42 (pdb code 5c2j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Complex Structure of the Gap Domain of Mgcracgap and CDC42, PDB code: 5c2j:

Magnesium binding site 1 out of 1 in 5c2j

Go back to Magnesium Binding Sites List in 5c2j
Magnesium binding site 1 out of 1 in the Complex Structure of the Gap Domain of Mgcracgap and CDC42


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Complex Structure of the Gap Domain of Mgcracgap and CDC42 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg500

b:23.0
occ:1.00
OG1 B:THR17 1.9 16.7 1.0
OG1 B:THR35 2.0 32.2 1.0
O2B B:GDP501 2.0 16.0 1.0
O B:HOH602 2.1 14.3 1.0
O B:HOH618 2.1 27.8 1.0
F3 B:AF3502 2.3 30.0 1.0
CB B:THR35 2.8 32.9 1.0
CB B:THR17 3.0 20.1 1.0
PB B:GDP501 3.5 19.8 1.0
CG2 B:THR35 3.8 30.2 1.0
AL B:AF3502 3.9 32.8 1.0
N B:THR35 3.9 32.7 1.0
N B:THR17 3.9 21.4 1.0
O2A B:GDP501 3.9 21.1 1.0
O3B B:GDP501 3.9 17.2 1.0
CA B:THR35 3.9 32.3 1.0
OD2 B:ASP57 4.0 38.0 1.0
OD1 B:ASP57 4.0 36.6 1.0
CG2 B:THR17 4.0 14.4 1.0
CA B:THR17 4.0 19.7 1.0
CG B:ASP57 4.3 35.7 1.0
O1B B:GDP501 4.3 21.6 1.0
O3A B:GDP501 4.5 22.6 1.0
PA B:GDP501 4.6 22.8 1.0
O B:VAL33 4.7 28.8 1.0
O1A B:GDP501 4.7 22.2 1.0
NH2 A:ARG385 4.7 18.7 1.0
O B:THR58 4.7 31.6 1.0
O B:HOH613 4.8 24.1 1.0
F2 B:AF3502 4.8 30.1 1.0
C B:PRO34 4.8 32.1 1.0
CB B:LYS16 4.9 18.4 1.0

Reference:

K.Murayama, M.Kato-Murayama, T.Hosaka, T.Kawashima, T.Kitamura, S.Yokoyama, M.Shirouzu. Structural Basis of G-Protein Target Alternation of Mgcracgap By Phospholylation To Be Published.
Page generated: Sun Sep 29 01:54:52 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy