Magnesium in PDB 5ca7: Human Dna Polymerase Lambda- Mgdgtp Binary and Complex with 6 Paired Dna

All present enzymatic activity of Human Dna Polymerase Lambda- Mgdgtp Binary and Complex with 6 Paired Dna:
2.7.7.7;

The structure of Human Dna Polymerase Lambda- Mgdgtp Binary and Complex with 6 Paired Dna, PDB code: 5ca7 was solved by M.S.Liu, M.D.Tsai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.31 / 2.52
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	84.113, 84.113, 399.442, 90.00, 90.00, 120.00
R / Rfree (%)	20.9 / 24.6

The binding sites of Magnesium atom in the Human Dna Polymerase Lambda- Mgdgtp Binary and Complex with 6 Paired Dna (pdb code 5ca7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human Dna Polymerase Lambda- Mgdgtp Binary and Complex with 6 Paired Dna, PDB code: 5ca7:

Magnesium binding site 1 out of 1 in the Human Dna Polymerase Lambda- Mgdgtp Binary and Complex with 6 Paired Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Dna Polymerase Lambda- Mgdgtp Binary and Complex with 6 Paired Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:35.5 occ:1.00 OD2 A:ASP427 1.8 39.6 1.0 O1A A:DGT601 1.8 35.2 1.0 O2B A:DGT601 2.0 36.8 1.0 O2G A:DGT601 2.0 32.6 1.0 O A:HOH719 2.1 35.5 1.0 OD2 A:ASP429 2.2 34.1 1.0 CG A:ASP427 2.9 39.4 1.0 PB A:DGT601 3.0 33.1 1.0 PA A:DGT601 3.1 30.6 1.0 CG A:ASP429 3.1 37.6 1.0 PG A:DGT601 3.2 30.1 1.0 O3A A:DGT601 3.4 37.0 1.0 O3B A:DGT601 3.4 51.3 1.0 OD1 A:ASP429 3.4 40.2 1.0 OD1 A:ASP427 3.5 37.3 1.0 O A:ASP427 4.0 37.5 1.0 O1G A:DGT601 4.0 33.8 1.0 O5' A:DGT601 4.0 38.0 1.0 N A:ASP427 4.1 38.1 1.0 O2A A:DGT601 4.1 30.9 1.0 C A:ASP427 4.1 36.6 1.0 CB A:ASP427 4.2 38.4 1.0 O A:HOH716 4.2 34.8 1.0 O1B A:DGT601 4.2 42.7 1.0 O3G A:DGT601 4.2 36.8 1.0 C5' A:DGT601 4.2 31.9 1.0 CA A:ASP427 4.4 34.6 1.0 OG A:SER417 4.4 36.1 1.0 CB A:ASP429 4.5 37.7 1.0 N A:SER417 4.6 34.4 1.0 N A:ASP429 4.7 40.7 1.0 N A:VAL428 4.8 35.4 1.0 CA A:GLY416 4.8 29.3 1.0 O A:HOH749 4.8 43.6 1.0

M.S.Liu, H.Y.Tsai, X.X.Liu, M.C.Ho, W.J.Wu, M.D.Tsai. Structural Mechanism For the Fidelity Modulation of Dna Polymerase Lambda J.Am.Chem.Soc. V. 138 2389 2016.
ISSN: ESSN 1520-5126
PubMed: 26836966
DOI: 10.1021/JACS.5B13368