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Magnesium in PDB 5ca9: Structures of the Candida Albicans SEY1P Gtpase in Complex with GDPALF4-

Enzymatic activity of Structures of the Candida Albicans SEY1P Gtpase in Complex with GDPALF4-

All present enzymatic activity of Structures of the Candida Albicans SEY1P Gtpase in Complex with GDPALF4-:
3.6.5.5;

Protein crystallography data

The structure of Structures of the Candida Albicans SEY1P Gtpase in Complex with GDPALF4-, PDB code: 5ca9 was solved by L.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.76 / 2.80
Space group I 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 76.272, 120.527, 190.198, 90.00, 90.00, 90.00
R / Rfree (%) 25.3 / 27.9

Other elements in 5ca9:

The structure of Structures of the Candida Albicans SEY1P Gtpase in Complex with GDPALF4- also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Aluminium (Al) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structures of the Candida Albicans SEY1P Gtpase in Complex with GDPALF4- (pdb code 5ca9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structures of the Candida Albicans SEY1P Gtpase in Complex with GDPALF4-, PDB code: 5ca9:

Magnesium binding site 1 out of 1 in 5ca9

Go back to Magnesium Binding Sites List in 5ca9
Magnesium binding site 1 out of 1 in the Structures of the Candida Albicans SEY1P Gtpase in Complex with GDPALF4-


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structures of the Candida Albicans SEY1P Gtpase in Complex with GDPALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:30.3
occ:1.00
 OG1 A:THR95 2.1 56.3 1.0
O1B A:GDP703 2.1 38.3 1.0
F4 A:ALF702 2.4 41.0 1.0
OG A:SER72 2.5 46.9 1.0
O3B A:GDP703 2.6 31.2 1.0
PB A:GDP703 2.9 34.5 1.0
AL A:ALF702 3.0 32.9 1.0
F2 A:ALF702 3.2 38.4 1.0
N A:THR95 3.4 53.7 1.0
CB A:THR95 3.4 63.2 1.0
O2A A:GDP703 3.4 33.7 1.0
CB A:SER72 3.4 42.0 1.0
O3A A:GDP703 3.6 34.3 1.0
F1 A:ALF702 3.8 40.6 1.0
PA A:GDP703 3.8 37.4 1.0
CA A:THR95 3.9 55.6 1.0
CB A:THR94 4.0 58.2 1.0
F3 A:ALF702 4.3 31.7 1.0
N A:SER72 4.3 37.4 1.0
O2B A:GDP703 4.3 26.7 1.0
C A:THR94 4.4 53.6 1.0
O1A A:GDP703 4.4 40.8 1.0
CA A:SER72 4.5 40.0 1.0
CG2 A:THR95 4.6 70.1 1.0
CG2 A:THR94 4.6 58.2 1.0
CA A:THR94 4.6 54.1 1.0
O A:ASP84 4.7 53.4 1.0
OD2 A:ASP123 4.7 42.6 1.0
N A:THR94 4.9 54.1 1.0
OG1 A:THR94 4.9 58.0 1.0

Reference:

L.Yan, S.Sun, W.Wang, J.Shi, X.Hu, S.Wang, D.Su, Z.Rao, J.Hu, Z.Lou. Structures of the Yeast Dynamin-Like Gtpase SEY1P Provide Insight Into Homotypic Er Fusion J.Cell Biol. V. 210 961 2015.
ISSN: ESSN 1540-8140
PubMed: 26370501
DOI: 10.1083/JCB.201502078
Page generated: Sun Sep 29 02:01:48 2024

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