Magnesium in PDB 5cad: Crystal Structure of the Vicilin From Solanum Melongena Revealed Existence of Different Anionic Ligands in Structurally Similar Pockets

The structure of Crystal Structure of the Vicilin From Solanum Melongena Revealed Existence of Different Anionic Ligands in Structurally Similar Pockets, PDB code: 5cad was solved by A.Jain, A.Kumar, D.M.Salunke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.71 / 1.49
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	119.330, 119.330, 158.190, 90.00, 90.00, 120.00
R / Rfree (%)	19.9 / 21

The binding sites of Magnesium atom in the Crystal Structure of the Vicilin From Solanum Melongena Revealed Existence of Different Anionic Ligands in Structurally Similar Pockets (pdb code 5cad). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Vicilin From Solanum Melongena Revealed Existence of Different Anionic Ligands in Structurally Similar Pockets, PDB code: 5cad:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Vicilin From Solanum Melongena Revealed Existence of Different Anionic Ligands in Structurally Similar Pockets


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Vicilin From Solanum Melongena Revealed Existence of Different Anionic Ligands in Structurally Similar Pockets within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:14.8 occ:1.00 O A:ALA25 2.3 12.6 1.0 O A:GLY28 2.4 13.5 1.0 O A:HOH737 2.4 17.4 1.0 O A:HOH688 2.4 14.3 1.0 O A:HOH671 2.4 14.1 1.0 C A:ALA25 3.5 11.4 1.0 C A:GLY28 3.5 14.7 1.0 N A:ALA25 4.0 12.1 1.0 N A:GLY28 4.2 11.3 1.0 CA A:ALA25 4.2 11.9 1.0 CB A:ASP29 4.2 15.3 1.0 O A:HOH600 4.3 33.0 1.0 CA A:GLY28 4.4 14.3 1.0 N A:ASP29 4.4 13.8 1.0 CA A:ASP29 4.5 14.5 1.0 CB A:ALA25 4.5 13.6 1.0 O A:HOH503 4.5 30.0 1.0 N A:SER26 4.5 10.3 1.0 O A:SER26 4.6 13.2 1.0 CG A:ASP29 4.6 17.1 1.0 OD1 A:ASP29 4.6 20.0 1.0 C A:SER26 4.6 12.1 1.0 CA A:SER26 4.7 11.3 1.0

A.Jain, A.Kumar, D.M.Salunke. Crystal Structure of the Vicilin From Solanum Melongena Reveals Existence of Different Anionic Ligands in Structurally Similar Pockets Sci Rep V. 6 23600 2016.
ISSN: ESSN 2045-2322
PubMed: 27004988
DOI: 10.1038/SREP23600