Magnesium in PDB 5cb2: The Structure of Candida Albicans SEY1P in Complex with Gmppnp

All present enzymatic activity of The Structure of Candida Albicans SEY1P in Complex with Gmppnp:
3.6.5.5;

The structure of The Structure of Candida Albicans SEY1P in Complex with Gmppnp, PDB code: 5cb2 was solved by L.Yan, S.Sun, W.Wang, J.Shi, X.Hu, S.Wang, Z.Rao, J.Hu, Z.Lou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.90
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	76.566, 120.926, 190.455, 90.00, 90.00, 90.00
R / Rfree (%)	26 / 29.8

The binding sites of Magnesium atom in the The Structure of Candida Albicans SEY1P in Complex with Gmppnp (pdb code 5cb2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of Candida Albicans SEY1P in Complex with Gmppnp, PDB code: 5cb2:

Magnesium binding site 1 out of 1 in the The Structure of Candida Albicans SEY1P in Complex with Gmppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Candida Albicans SEY1P in Complex with Gmppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:38.9 occ:1.00 OG A:SER72 1.9 62.5 1.0 O1B A:GNP702 1.9 24.2 0.5 OG1 A:THR95 2.0 64.5 1.0 O1G A:GNP702 2.0 16.9 0.4 CB A:SER72 3.1 49.1 1.0 CB A:THR95 3.2 65.4 1.0 PG A:GNP702 3.3 18.0 0.2 PB A:GNP702 3.4 22.3 0.5 OD2 A:ASP123 3.7 48.4 1.0 N A:SER72 3.8 41.4 1.0 N3B A:GNP702 3.8 24.3 0.8 N A:THR95 3.8 68.0 1.0 O2A A:GNP702 3.8 33.2 0.7 CA A:SER72 4.0 44.4 1.0 O A:ASP84 4.0 66.6 1.0 CA A:THR95 4.1 64.6 1.0 O3G A:GNP702 4.2 19.2 0.5 OD1 A:ASP123 4.2 43.6 1.0 O2G A:GNP702 4.3 19.1 0.7 CG2 A:THR95 4.3 67.4 1.0 O2B A:GNP702 4.3 16.7 0.4 CG A:ASP123 4.4 48.2 1.0 O3A A:GNP702 4.4 26.2 0.8 PA A:GNP702 4.6 29.9 0.6 O A:VAL124 4.7 46.2 1.0 CB A:LYS71 4.8 44.8 1.0 C A:THR94 5.0 71.2 1.0 CB A:THR94 5.0 70.9 1.0 C A:LYS71 5.0 41.3 1.0

L.Yan, S.Sun, W.Wang, J.Shi, X.Hu, S.Wang, D.Su, Z.Rao, J.Hu, Z.Lou. Structures of the Yeast Dynamin-Like Gtpase SEY1P Provide Insight Into Homotypic Er Fusion J.Cell Biol. V. 210 961 2015.
ISSN: ESSN 1540-8140
PubMed: 26370501
DOI: 10.1083/JCB.201502078