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Magnesium in PDB 5cbk: Crystal Structure of the Strigolactone Receptor SHHTL5 From Striga Hermonthica

Protein crystallography data

The structure of Crystal Structure of the Strigolactone Receptor SHHTL5 From Striga Hermonthica, PDB code: 5cbk was solved by P.J.Stogios, O.Onopriyenko, V.Yim, A.Savchenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.53 / 2.46
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 102.282, 102.282, 101.734, 90.00, 90.00, 120.00
R / Rfree (%) 16.8 / 22.6

Other elements in 5cbk:

The structure of Crystal Structure of the Strigolactone Receptor SHHTL5 From Striga Hermonthica also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Strigolactone Receptor SHHTL5 From Striga Hermonthica (pdb code 5cbk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Strigolactone Receptor SHHTL5 From Striga Hermonthica, PDB code: 5cbk:

Magnesium binding site 1 out of 1 in 5cbk

Go back to Magnesium Binding Sites List in 5cbk
Magnesium binding site 1 out of 1 in the Crystal Structure of the Strigolactone Receptor SHHTL5 From Striga Hermonthica


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Strigolactone Receptor SHHTL5 From Striga Hermonthica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:33.1
occ:0.56
O A:HOH494 2.1 34.4 1.0
O A:HOH427 2.1 55.2 1.0
OD1 A:ASN9 2.1 40.7 1.0
O A:SER6 2.1 42.9 1.0
C A:SER6 3.3 40.2 1.0
CG A:ASN9 3.3 34.7 1.0
CA A:SER6 3.9 40.7 1.0
O A:HOH629 4.1 31.9 1.0
ND2 A:ASN9 4.2 30.9 1.0
CA A:ASN9 4.2 34.8 1.0
CB A:SER6 4.2 45.4 1.0
N A:ASN9 4.3 33.1 1.0
CB A:ASN9 4.3 32.8 1.0
O A:HOH470 4.3 30.7 1.0
N A:ALA7 4.4 36.9 1.0
CA A:ALA7 4.7 39.5 1.0
C A:ALA7 4.8 43.0 1.0
OG A:SER6 4.8 50.7 1.0
O A:ALA7 4.9 43.8 1.0
O A:THR56 4.9 34.3 1.0

Reference:

S.Toh, D.Holbrook-Smith, P.J.Stogios, O.Onopriyenko, S.Lumba, Y.Tsuchiya, A.Savchenko, P.Mccourt. Structure-Function Analysis Identifies Highly Sensitive Strigolactone Receptors in Striga. Science V. 350 203 2015.
ISSN: ESSN 1095-9203
PubMed: 26450211
DOI: 10.1126/SCIENCE.AAC9476
Page generated: Sun Sep 29 02:02:52 2024

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