Magnesium in PDB 5cco: Staphylococcus Bacteriophage 80ALPHA Dutpase with Dump.

The structure of Staphylococcus Bacteriophage 80ALPHA Dutpase with Dump., PDB code: 5cco was solved by E.Maiques, N.Quiles-Puchalt, J.Donderis, J.R.Ciges, C.Alite, J.Bowring, J.R.Penades, A.Marina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.52 / 2.33
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	87.000, 87.000, 87.000, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 24.4

The binding sites of Magnesium atom in the Staphylococcus Bacteriophage 80ALPHA Dutpase with Dump. (pdb code 5cco). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Staphylococcus Bacteriophage 80ALPHA Dutpase with Dump., PDB code: 5cco:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Staphylococcus Bacteriophage 80ALPHA Dutpase with Dump.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Staphylococcus Bacteriophage 80ALPHA Dutpase with Dump. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:53.5 occ:0.33 OG1 A:THR77 3.9 25.4 1.0 CB A:THR77 4.1 28.2 1.0 CG2 A:THR77 4.5 29.8 1.0

Magnesium binding site 2 out of 2 in the Staphylococcus Bacteriophage 80ALPHA Dutpase with Dump.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Staphylococcus Bacteriophage 80ALPHA Dutpase with Dump. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:26.8 occ:0.33 O A:HOH323 2.6 20.3 1.0 OD2 A:ASP95 2.6 24.7 1.0 OD1 A:ASP95 2.8 22.2 1.0 CG A:ASP95 3.1 25.1 1.0 NZ A:LYS93 4.3 25.8 1.0 O A:ASP95 4.5 24.8 1.0 CB A:ASP95 4.6 24.2 1.0 NE2 A:GLN40 4.6 26.5 1.0 OE1 A:GLN40 4.8 25.9 1.0

E.Maiques, N.Quiles-Puchalt, J.Donderis, J.R.Ciges-Tomas, C.Alite, J.Z.Bowring, S.Humphrey, J.R.Penades, A.Marina. Another Look at the Mechanism Involving Trimeric Dutpases in Staphylococcus Aureus Pathogenicity Island Induction Involves Novel Players in the Party. Nucleic Acids Res. V. 44 5457 2016.
ISSN: ESSN 1362-4962
PubMed: 27112567
DOI: 10.1093/NAR/GKW317