Magnesium in PDB 5ce3: The Yersinia Yopo - Actin Complex with Mgadp

The structure of The Yersinia Yopo - Actin Complex with Mgadp, PDB code: 5ce3 was solved by W.L.Lee, P.Singaravelu, J.M.Grimes, R.C.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	114.60 / 2.93
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	108.730, 121.750, 118.580, 90.00, 104.88, 90.00
R / Rfree (%)	19.6 / 24

The structure of The Yersinia Yopo - Actin Complex with Mgadp also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Magnesium atom in the The Yersinia Yopo - Actin Complex with Mgadp (pdb code 5ce3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Yersinia Yopo - Actin Complex with Mgadp, PDB code: 5ce3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Yersinia Yopo - Actin Complex with Mgadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Yersinia Yopo - Actin Complex with Mgadp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:59.8 occ:1.00 O2B B:ADP801 2.0 68.1 1.0 O2A B:ADP801 2.0 59.2 1.0 OD1 B:ASN272 2.2 58.0 1.0 O B:HOH902 2.2 59.4 1.0 O B:HOH903 2.2 60.5 1.0 OD2 B:ASP286 2.2 71.5 1.0 PB B:ADP801 3.2 66.3 1.0 CG B:ASN272 3.2 57.6 1.0 PA B:ADP801 3.2 61.9 1.0 CG B:ASP286 3.3 70.8 1.0 O3A B:ADP801 3.6 62.3 1.0 ND2 B:ASN272 3.6 57.0 1.0 O3B B:ADP801 3.7 61.7 1.0 CB B:ASP286 3.8 66.7 1.0 C5' B:ADP801 4.1 59.2 1.0 O5' B:ADP801 4.1 59.4 1.0 OD1 B:ASP286 4.2 73.7 1.0 O1A B:ADP801 4.4 59.8 1.0 O1B B:ADP801 4.4 67.2 1.0 CB B:ASN272 4.6 57.4 1.0 O3' B:ADP801 4.6 55.0 1.0 O B:HOH901 4.7 42.3 1.0 C3' B:ADP801 4.7 55.5 1.0 O B:GLY271 4.8 65.1 1.0 C B:GLY271 4.8 62.0 1.0 CA B:ASN272 4.8 58.2 1.0 N B:ASN272 4.8 60.5 1.0 C4' B:ADP801 5.0 58.0 1.0

Magnesium binding site 2 out of 2 in the The Yersinia Yopo - Actin Complex with Mgadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Yersinia Yopo - Actin Complex with Mgadp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg802 b:51.1 occ:1.00 O2B D:ADP801 1.9 71.5 1.0 OD1 D:ASN272 2.3 63.7 1.0 O2A D:ADP801 2.3 61.2 1.0 OD2 D:ASP286 2.4 62.3 1.0 PB D:ADP801 3.2 69.1 1.0 CG D:ASN272 3.3 62.1 1.0 O D:HOH902 3.3 70.5 1.0 CG D:ASP286 3.5 62.0 1.0 PA D:ADP801 3.5 63.2 1.0 ND2 D:ASN272 3.6 61.4 1.0 O3A D:ADP801 3.7 65.4 1.0 O3B D:ADP801 3.9 66.6 1.0 C5' D:ADP801 4.1 57.2 1.0 CB D:ASP286 4.1 59.7 1.0 O5' D:ADP801 4.3 56.1 1.0 O3' D:ADP801 4.3 59.3 1.0 OD1 D:ASP286 4.4 62.9 1.0 O1B D:ADP801 4.4 63.8 1.0 O D:HOH901 4.6 41.1 1.0 CB D:ASN272 4.6 61.6 1.0 C3' D:ADP801 4.7 58.3 1.0 O1A D:ADP801 4.8 58.8 1.0 C D:GLY271 4.8 65.5 1.0 O D:GLY271 4.8 67.0 1.0 N D:ASN272 4.8 63.8 1.0 C4' D:ADP801 4.9 58.4 1.0 CE D:LYS269 4.9 64.5 1.0 CA D:ASN272 4.9 61.8 1.0 OD2 D:ASP267 5.0 70.4 1.0

W.L.Lee, J.M.Grimes, R.C.Robinson. The Yersinia Yopo - Actin Complex with Mgadp To Be Published.