Magnesium in PDB 5cee: Malic Enzyme From Candidatus Phytoplasma Aywb in Complex with Nad and MG2+

All present enzymatic activity of Malic Enzyme From Candidatus Phytoplasma Aywb in Complex with Nad and MG2+:
1.1.1.38;

The structure of Malic Enzyme From Candidatus Phytoplasma Aywb in Complex with Nad and MG2+, PDB code: 5cee was solved by C.E.Alvarez, F.Trajtenberg, N.Larrieux, M.Saigo, M.A.Mussi, C.S.Andreo, M.F.Drincovich, A.Buschiazzo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.26 / 2.50
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	48.236, 48.236, 291.068, 90.00, 90.00, 120.00
R / Rfree (%)	14.6 / 19.5

The binding sites of Magnesium atom in the Malic Enzyme From Candidatus Phytoplasma Aywb in Complex with Nad and MG2+ (pdb code 5cee). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Malic Enzyme From Candidatus Phytoplasma Aywb in Complex with Nad and MG2+, PDB code: 5cee:

Magnesium binding site 1 out of 1 in the Malic Enzyme From Candidatus Phytoplasma Aywb in Complex with Nad and MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Malic Enzyme From Candidatus Phytoplasma Aywb in Complex with Nad and MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:32.6 occ:1.00 OD1 A:ASP134 1.9 23.7 1.0 O A:HOH507 2.0 28.0 1.0 O A:HOH501 2.1 40.0 1.0 OE2 A:GLU133 2.1 29.8 1.0 O A:HOH503 2.1 32.1 1.0 OD1 A:ASP159 2.2 29.2 1.0 OD2 A:ASP159 2.8 33.0 1.0 CG A:ASP159 2.9 28.1 1.0 CG A:ASP134 3.0 29.2 1.0 CD A:GLU133 3.1 30.3 1.0 CG A:GLU133 3.5 30.7 1.0 OD2 A:ASP134 3.6 32.2 1.0 N A:ASP134 4.0 25.9 1.0 OE1 A:GLU133 4.1 32.3 1.0 CB A:ASP134 4.2 27.7 1.0 CA A:ASP134 4.3 26.6 1.0 CB A:ASP159 4.4 28.1 1.0 CB A:GLU133 4.8 28.7 1.0 C A:GLU133 4.8 25.4 1.0 CA A:GLU133 5.0 28.6 1.0

C.E.Alvarez, F.Trajtenberg, N.Larrieux, M.Saigo, A.Golic, C.S.Andreo, S.A.Hogenhout, M.A.Mussi, M.F.Drincovich, A.Buschiazzo. The Crystal Structure of the Malic Enzyme From Candidatus Phytoplasma Reveals the Minimal Structural Determinants For A Malic Enzyme Acta Crystallogr.,Sect.D V. 74 2018.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798318002759