Magnesium in PDB 5d0n: Crystal Structure of Maize Pdrp Bound with Amp

All present enzymatic activity of Crystal Structure of Maize Pdrp Bound with Amp:
2.7.11.32; 2.7.4.27;

The structure of Crystal Structure of Maize Pdrp Bound with Amp, PDB code: 5d0n was solved by L.Jiang, Z.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 3.20
Space group	P 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	175.342, 175.342, 175.342, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 23.5

The binding sites of Magnesium atom in the Crystal Structure of Maize Pdrp Bound with Amp (pdb code 5d0n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Maize Pdrp Bound with Amp, PDB code: 5d0n:

Magnesium binding site 1 out of 1 in the Crystal Structure of Maize Pdrp Bound with Amp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Maize Pdrp Bound with Amp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:61.7 occ:1.00 O5' A:AMP501 2.6 45.2 1.0 O1P A:AMP501 2.9 40.9 1.0 O3P A:AMP501 3.0 45.2 1.0 P A:AMP501 3.0 43.8 1.0 C A:GLY148 3.3 39.8 1.0 CA A:GLY148 3.3 40.2 1.0 N A:ALA151 3.4 32.8 1.0 OG A:SER144 3.4 42.8 1.0 OG1 A:THR204 3.4 53.0 1.0 N A:TRP149 3.5 41.0 1.0 CB A:SER144 3.6 43.3 1.0 N A:THR150 3.6 37.6 1.0 N A:GLY148 3.6 41.3 1.0 C5' A:AMP501 3.6 45.6 1.0 CB A:THR150 3.7 33.5 1.0 O A:GLY148 3.7 39.5 1.0 CB A:ALA151 3.8 34.1 1.0 CG2 A:THR204 3.8 50.4 1.0 OG1 A:THR150 3.8 33.6 1.0 CA A:THR150 4.0 34.7 1.0 CA A:ALA151 4.2 33.8 1.0 CB A:THR204 4.2 50.5 1.0 C A:THR150 4.2 33.2 1.0 C A:TRP149 4.3 40.0 1.0 CA A:TRP149 4.5 42.5 1.0 O2P A:AMP501 4.5 42.3 1.0 C4' A:AMP501 4.7 45.5 1.0 C A:THR147 4.9 42.9 1.0 OG1 A:THR147 4.9 43.1 1.0 CA A:SER144 5.0 43.5 1.0

L.Jiang, Y.B.Chen, J.Zheng, Z.Chen, Y.Liu, Y.Tao, W.Wu, Z.Chen, B.C.Wang. Structural Basis of Reversible Phosphorylation By Maize Pyruvate Orthophosphate Dikinase Regulatory Protein Plant Physiol. V. 170 732 2016.
ISSN: ESSN 1532-2548
PubMed: 26620526
DOI: 10.1104/PP.15.01709