Magnesium in PDB 5d0u: Crystal Structure of the Rna-Helicase PRP43 From Chaetomium Thermophilum Bound to Adp

The structure of Crystal Structure of the Rna-Helicase PRP43 From Chaetomium Thermophilum Bound to Adp, PDB code: 5d0u was solved by M.J.Tauchert, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.94 / 2.92
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	152.211, 152.211, 92.766, 90.00, 90.00, 120.00
R / Rfree (%)	19 / 23.1

The binding sites of Magnesium atom in the Crystal Structure of the Rna-Helicase PRP43 From Chaetomium Thermophilum Bound to Adp (pdb code 5d0u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Rna-Helicase PRP43 From Chaetomium Thermophilum Bound to Adp, PDB code: 5d0u:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Rna-Helicase PRP43 From Chaetomium Thermophilum Bound to Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Rna-Helicase PRP43 From Chaetomium Thermophilum Bound to Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:66.8 occ:1.00 OG1 A:THR126 2.0 74.9 1.0 O A:HOH903 2.1 67.7 1.0 O A:HOH902 2.1 68.3 1.0 O A:HOH901 2.1 71.3 0.8 O1B A:ADP801 2.1 96.9 1.0 O A:HOH904 2.1 82.9 0.8 O3A A:ADP801 2.8 99.6 1.0 CB A:THR126 3.0 69.6 1.0 PB A:ADP801 3.0 84.7 1.0 OE2 A:GLU219 3.1 0.8 1.0 O A:SER387 3.7 78.4 1.0 OD2 A:ASP218 3.7 70.5 1.0 O2B A:ADP801 3.8 97.1 1.0 CG2 A:THR126 3.9 62.3 1.0 CA A:THR126 4.2 77.9 1.0 PA A:ADP801 4.2 68.1 1.0 N A:THR126 4.2 76.2 1.0 NZ A:LYS125 4.2 69.1 1.0 O3B A:ADP801 4.2 93.3 1.0 CD A:GLU219 4.3 99.0 1.0 O2A A:ADP801 4.4 0.6 1.0 CG A:ASP218 4.6 64.5 1.0 O A:THR386 4.7 90.9 1.0 C A:SER387 4.7 63.0 1.0 O1A A:ADP801 4.7 69.1 1.0 OD1 A:ASP218 4.8 66.6 1.0 OE1 A:GLN150 4.9 0.9 1.0 CG A:LYS125 5.0 74.0 1.0 NE2 A:GLN150 5.0 79.6 1.0

M.J.Tauchert, J.B.Fourmann, H.Christian, R.Luhrmann, R.Ficner. Structural and Functional Analysis of the Rna Helicase PRP43 From the Thermophilic Eukaryote Chaetomium Thermophilum. Acta Crystallogr.,Sect.F V. 72 112 2016.
ISSN: ESSN 2053-230X
PubMed: 26841761
DOI: 10.1107/S2053230X15024498