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Magnesium in PDB 5d4e: Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Enzymatic activity of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
All present enzymatic activity of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp:
2.7.7.6;
2.7.7.6;
Protein crystallography data
The structure of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp, PDB code: 5d4e
was solved by
Y.Zhang,
R.H.Ebright,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 39.68 / 3.08 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 185.811, 103.948, 297.143, 90.00, 98.47, 90.00 |
| R / Rfree (%) | 21 / 24.6 |
Other elements in 5d4e:
The structure of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp also contains other interesting chemical elements:
| Zinc | (Zn) | 4 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
(pdb code 5d4e). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp, PDB code: 5d4e:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;
In total 9 binding sites of Magnesium where determined in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp, PDB code: 5d4e:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;
Magnesium binding site 1 out of 9 in 5d4e
Go back to
Magnesium Binding Sites List in 5d4e
Magnesium binding site 1 out
of 9 in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp within 5.0Å range:
|
Magnesium binding site 2 out of 9 in 5d4e
Go back to
Magnesium Binding Sites List in 5d4e
Magnesium binding site 2 out
of 9 in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp within 5.0Å range:
|
Magnesium binding site 3 out of 9 in 5d4e
Go back to
Magnesium Binding Sites List in 5d4e
Magnesium binding site 3 out
of 9 in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp within 5.0Å range:
|
Magnesium binding site 4 out of 9 in 5d4e
Go back to
Magnesium Binding Sites List in 5d4e
Magnesium binding site 4 out
of 9 in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp within 5.0Å range:
|
Magnesium binding site 5 out of 9 in 5d4e
Go back to
Magnesium Binding Sites List in 5d4e
Magnesium binding site 5 out
of 9 in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp within 5.0Å range:
|
Magnesium binding site 6 out of 9 in 5d4e
Go back to
Magnesium Binding Sites List in 5d4e
Magnesium binding site 6 out
of 9 in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp within 5.0Å range:
|
Magnesium binding site 7 out of 9 in 5d4e
Go back to
Magnesium Binding Sites List in 5d4e
Magnesium binding site 7 out
of 9 in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp within 5.0Å range:
|
Magnesium binding site 8 out of 9 in 5d4e
Go back to
Magnesium Binding Sites List in 5d4e
Magnesium binding site 8 out
of 9 in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp within 5.0Å range:
|
Magnesium binding site 9 out of 9 in 5d4e
Go back to
Magnesium Binding Sites List in 5d4e
Magnesium binding site 9 out
of 9 in the Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of Thermus Thermophilus Product Complex For Transcription Initiation with 3'-Dephosphate-Coa and Ctp within 5.0Å range:
|
Reference:
J.G.Bird,
Y.Zhang,
Y.Tian,
N.Panova,
I.Barvik,
L.Greene,
M.Liu,
B.Buckley,
L.Krasny,
J.K.Lee,
C.D.Kaplan,
R.H.Ebright,
B.E.Nickels.
The Mechanism of Rna 5' Capping with Nad(+), Nadh and Desphospho-Coa. Nature V. 535 444 2016.
ISSN: ESSN 1476-4687
PubMed: 27383794
DOI: 10.1038/NATURE18622
Page generated: Sun Sep 29 02:30:56 2024
ISSN: ESSN 1476-4687
PubMed: 27383794
DOI: 10.1038/NATURE18622
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