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Magnesium in PDB 5d6j: Crystal Structure of A Mycobacterial Protein

Protein crystallography data

The structure of Crystal Structure of A Mycobacterial Protein, PDB code: 5d6j was solved by W.J.Li, L.J.Bi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.99 / 2.25
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 122.211, 122.211, 142.588, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 20.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Mycobacterial Protein (pdb code 5d6j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Mycobacterial Protein, PDB code: 5d6j:

Magnesium binding site 1 out of 1 in 5d6j

Go back to Magnesium Binding Sites List in 5d6j
Magnesium binding site 1 out of 1 in the Crystal Structure of A Mycobacterial Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Mycobacterial Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:31.2
occ:1.00
O2B A:ATP702 2.0 28.7 1.0
O1G A:ATP702 2.0 31.5 1.0
O A:HOH926 2.0 28.0 1.0
O A:HOH835 2.1 27.2 1.0
O A:HOH827 2.2 25.4 1.0
O A:HOH921 2.2 27.1 1.0
PG A:ATP702 3.1 28.9 1.0
PB A:ATP702 3.2 26.8 1.0
O2G A:ATP702 3.6 33.9 1.0
O3B A:ATP702 3.6 28.1 1.0
O3A A:ATP702 3.8 30.9 1.0
NH2 A:ARG192 4.0 33.0 1.0
O A:THR467 4.0 29.9 1.0
OE2 A:GLU347 4.1 29.8 1.0
O A:HOH1072 4.2 26.4 1.0
O3' A:ATP702 4.2 27.5 1.0
O A:HOH1220 4.2 47.6 1.0
OE1 A:GLU347 4.3 30.9 1.0
NH1 A:ARG483 4.4 23.6 1.0
O2A A:ATP702 4.4 26.2 1.0
O3G A:ATP702 4.4 31.2 1.0
O1B A:ATP702 4.6 27.3 1.0
CD A:GLU347 4.6 34.0 1.0
PA A:ATP702 4.7 25.5 1.0
CG2 A:THR187 4.8 25.3 1.0
C5' A:ATP702 4.9 27.7 1.0
O5' A:ATP702 4.9 27.3 1.0
C4' A:ATP702 4.9 26.3 1.0
CB A:THR187 4.9 25.3 1.0
CZ A:ARG192 4.9 38.1 1.0

Reference:

W.Li, S.Gu, J.Fleming, L.Bi. Crystal Structure of FADD32, An Enzyme Essential For Mycolic Acid Biosynthesis in Mycobacteria. Sci Rep V. 5 15493 2015.
ISSN: ESSN 2045-2322
PubMed: 26628098
DOI: 10.1038/SREP15493
Page generated: Mon Dec 14 20:10:14 2020

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