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Magnesium in PDB 5d91: Structure of A Phosphatidylinositolphosphate (Pip) Synthase From Renibacterium Salmoninarum

Protein crystallography data

The structure of Structure of A Phosphatidylinositolphosphate (Pip) Synthase From Renibacterium Salmoninarum, PDB code: 5d91 was solved by O.B.Clarke, D.T.Tomasek, C.D.Jorge, M.Belcher Dufrisne, M.Kim, S.Banerjee, K.R.Rajashankar, W.A.Hendrickson, H.Santos, F.Mancia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.98 / 2.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 48.632, 94.069, 103.916, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 24.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of A Phosphatidylinositolphosphate (Pip) Synthase From Renibacterium Salmoninarum (pdb code 5d91). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of A Phosphatidylinositolphosphate (Pip) Synthase From Renibacterium Salmoninarum, PDB code: 5d91:

Magnesium binding site 1 out of 1 in 5d91

Go back to Magnesium Binding Sites List in 5d91
Magnesium binding site 1 out of 1 in the Structure of A Phosphatidylinositolphosphate (Pip) Synthase From Renibacterium Salmoninarum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Phosphatidylinositolphosphate (Pip) Synthase From Renibacterium Salmoninarum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg307

b:57.0
occ:1.00
OD1 A:ASP87 2.2 47.6 0.5
OD1 A:ASP66 2.2 0.8 1.0
OD2 A:ASP91 2.4 50.6 1.0
CG A:ASP87 3.1 46.5 0.5
CG A:ASP91 3.1 50.4 1.0
OD1 A:ASP91 3.2 59.3 1.0
OD2 A:ASP87 3.3 52.0 0.5
CG A:ASP66 3.4 0.5 1.0
O A:HOH432 4.0 65.2 1.0
OD2 A:ASP66 4.2 0.8 1.0
O A:ASP87 4.2 41.7 0.5
O A:ASP87 4.3 41.9 0.5
CB A:ASP87 4.4 40.8 0.5
CB A:ASP87 4.4 40.8 0.5
CB A:ASP66 4.5 0.2 1.0
CB A:ASP91 4.6 42.4 1.0
C A:ASP87 4.7 41.6 0.5
NH1 A:ARG150 4.8 80.2 1.0
C A:ASP87 4.8 41.6 0.5
CG A:ASP87 4.8 40.2 0.5
CA A:ASP87 4.8 40.6 0.5
CA A:ASP87 4.9 40.6 0.5
OD1 A:ASP87 4.9 39.7 0.5

Reference:

O.B.Clarke, D.Tomasek, C.D.Jorge, M.B.Dufrisne, M.Kim, S.Banerjee, K.R.Rajashankar, L.Shapiro, W.A.Hendrickson, H.Santos, F.Mancia. Structural Basis For Phosphatidylinositol-Phosphate Biosynthesis. Nat Commun V. 6 8505 2015.
ISSN: ESSN 2041-1723
PubMed: 26510127
DOI: 10.1038/NCOMMS9505
Page generated: Mon Dec 14 20:10:35 2020

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