Magnesium in PDB 5dam: Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg)

Protein crystallography data

The structure of Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg), PDB code: 5dam was solved by G.R.Clark, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.638, 40.408, 64.344, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 29.7

Other elements in 5dam:

The structure of Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg) also contains other interesting chemical elements:

Iodine (I) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg) (pdb code 5dam). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg), PDB code: 5dam:

Magnesium binding site 1 out of 1 in 5dam

Go back to Magnesium Binding Sites List in 5dam
Magnesium binding site 1 out of 1 in the Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of P-Iodohoechst Bound to D(Cgcaaatttgcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:21.5
occ:1.00
O A:HOH318 2.1 24.8 1.0
O A:HOH325 2.1 18.4 1.0
O B:HOH105 2.1 22.2 1.0
O A:HOH331 4.0 33.1 1.0
O6 B:DG10 4.1 20.3 1.0
N7 A:DG2 4.2 21.4 1.0
O6 A:DG2 4.3 17.7 1.0
O B:HOH117 4.4 25.6 1.0
C5 A:DC1 4.5 21.0 1.0
O B:HOH123 4.6 26.9 1.0
C6 A:DC1 4.8 24.6 1.0
N4 A:DC3 4.9 22.0 1.0
C5 A:DG2 5.0 30.1 1.0

Reference:

G.R.Clark, G.R.Clark. N/A N/A.
Page generated: Mon Dec 14 20:10:51 2020

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