Magnesium in PDB 5db4: Mycobacterium Abscessus Nadd in Complex with Mg-Atp, Space Group I41

All present enzymatic activity of Mycobacterium Abscessus Nadd in Complex with Mg-Atp, Space Group I41:
2.7.7.18;

The structure of Mycobacterium Abscessus Nadd in Complex with Mg-Atp, Space Group I41, PDB code: 5db4 was solved by R.W.Reed, K.V.Korotkov, Seattle Structural Genomics Center Forinfectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.38 / 2.28
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	67.098, 67.098, 229.538, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 24.8

The binding sites of Magnesium atom in the Mycobacterium Abscessus Nadd in Complex with Mg-Atp, Space Group I41 (pdb code 5db4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Mycobacterium Abscessus Nadd in Complex with Mg-Atp, Space Group I41, PDB code: 5db4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Mycobacterium Abscessus Nadd in Complex with Mg-Atp, Space Group I41


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Abscessus Nadd in Complex with Mg-Atp, Space Group I41 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:42.2 occ:1.00 O1G A:ATP301 2.0 49.8 1.0 O A:HOH428 2.1 38.7 1.0 O1B A:ATP301 2.1 41.7 1.0 O A:HOH440 2.1 38.6 1.0 O A:HOH413 2.2 53.4 1.0 O1A A:ATP301 2.2 47.7 1.0 PG A:ATP301 3.2 48.0 1.0 PB A:ATP301 3.2 45.3 1.0 O3B A:ATP301 3.4 50.9 1.0 PA A:ATP301 3.4 45.1 1.0 O3A A:ATP301 3.6 43.0 1.0 NH1 A:ARG137 3.8 52.5 1.0 O3G A:ATP301 3.9 45.4 1.0 O A:HOH403 4.0 48.2 1.0 O5' A:ATP301 4.0 46.1 1.0 OD2 A:ASP112 4.0 47.6 1.0 O A:HOH452 4.1 50.2 1.0 O2G A:ATP301 4.3 47.1 1.0 O A:HOH462 4.4 58.4 1.0 NH2 A:ARG137 4.4 57.5 1.0 O2B A:ATP301 4.5 41.0 1.0 O2A A:ATP301 4.6 41.2 1.0 CZ A:ARG137 4.6 54.5 1.0 O A:HOH401 4.9 56.7 1.0

Magnesium binding site 2 out of 2 in the Mycobacterium Abscessus Nadd in Complex with Mg-Atp, Space Group I41


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mycobacterium Abscessus Nadd in Complex with Mg-Atp, Space Group I41 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:42.4 occ:1.00 O B:HOH426 2.0 38.9 1.0 O3G B:ATP301 2.0 41.8 1.0 O2A B:ATP301 2.0 40.8 1.0 O B:HOH452 2.1 47.9 1.0 O B:HOH436 2.1 48.5 1.0 O2B B:ATP301 2.3 43.0 1.0 PB B:ATP301 3.3 42.1 1.0 PG B:ATP301 3.3 43.7 1.0 PA B:ATP301 3.3 42.9 1.0 O3B B:ATP301 3.4 40.2 1.0 O3A B:ATP301 3.6 43.3 1.0 O B:HOH434 3.9 52.4 1.0 O5' B:ATP301 3.9 36.4 1.0 OD2 B:ASP112 4.1 52.6 1.0 O B:HOH406 4.1 36.3 1.0 NH1 B:ARG137 4.1 44.2 1.0 O2G B:ATP301 4.2 43.4 1.0 O1G B:ATP301 4.4 38.2 1.0 O1A B:ATP301 4.5 41.0 1.0 O1B B:ATP301 4.6 41.7 1.0 O B:HOH404 4.7 56.9 1.0 O B:HOH466 4.9 45.3 1.0

R.W.Reed, K.V.Korotkov. Mycobacterium Abscessus Nadd in Complex with Mg-Atp, Space Group I41 To Be Published.