Magnesium in PDB 5dgt: Benzoylformate Decarboxylase H70A Mutant at pH 8.5 From Pseudomonas Putida

Enzymatic activity of Benzoylformate Decarboxylase H70A Mutant at pH 8.5 From Pseudomonas Putida

All present enzymatic activity of Benzoylformate Decarboxylase H70A Mutant at pH 8.5 From Pseudomonas Putida:
4.1.1.7;

Protein crystallography data

The structure of Benzoylformate Decarboxylase H70A Mutant at pH 8.5 From Pseudomonas Putida, PDB code: 5dgt was solved by A.K.Bera, M.S.Hasson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.51 / 1.08
*Space group*	I 2 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	81.341, 94.802, 137.342, 90.00, 90.00, 90.00
*R / R_free (%)*	14.3 / 15

Other elements in 5dgt:

The structure of Benzoylformate Decarboxylase H70A Mutant at pH 8.5 From Pseudomonas Putida also contains other interesting chemical elements:

Calcium

(Ca)

3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Benzoylformate Decarboxylase H70A Mutant at pH 8.5 From Pseudomonas Putida (pdb code 5dgt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Benzoylformate Decarboxylase H70A Mutant at pH 8.5 From Pseudomonas Putida, PDB code: 5dgt:

Magnesium binding site 1 out of 1 in 5dgt

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Magnesium Binding Sites List in 5dgt

Magnesium binding site 1 out of 1 in the Benzoylformate Decarboxylase H70A Mutant at pH 8.5 From Pseudomonas Putida

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Benzoylformate Decarboxylase H70A Mutant at pH 8.5 From Pseudomonas Putida within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg601 b:9.4 occ:0.50	O	A:LEU118	2.4	8.9	1.0
	O	A:ARG120	2.4	9.4	1.0
	O	A:ASN117	2.7	8.8	1.0
	C	A:LEU118	3.2	8.1	1.0
	O	A:HOH1024	3.2	10.5	0.5
	HA	A:LEU118	3.3	9.6	1.0
	HE1	A:MET79	3.4	16.0	0.5
	C	A:ARG120	3.6	9.0	1.0
	H	A:ARG120	3.7	10.3	1.0
	CA	A:LEU118	3.7	8.0	1.0
	C	A:ASN117	3.8	8.2	1.0
	N	A:ARG120	3.8	8.6	1.0
	HB2	A:ARG120	3.9	11.7	1.0
	HE2	A:MET79	4.2	12.3	0.5
	N	A:PRO119	4.2	8.6	1.0
	HD12	A:LEU118	4.2	13.0	1.0
	CA	A:ARG120	4.2	8.5	1.0
	N	A:LEU118	4.2	8.0	1.0
	C	A:PRO119	4.3	9.2	1.0
	CE	A:MET79	4.3	13.3	0.5
	HE3	A:MET79	4.4	16.0	0.5
	HD3	A:PRO121	4.5	11.6	1.0
	HA	A:PRO119	4.5	11.3	1.0
	CA	A:PRO119	4.5	9.4	1.0
	CB	A:ARG120	4.6	9.8	1.0
	HB3	A:ASN117	4.7	10.7	1.0
	N	A:PRO121	4.7	8.4	1.0
	HE1	A:MET79	4.8	12.3	0.5
	HD2	A:PRO121	4.8	11.6	1.0
	CD	A:PRO121	4.9	9.7	1.0
	O	A:PRO119	4.9	9.8	1.0
	HE2	A:MET79	4.9	16.0	0.5
	CE	A:MET79	4.9	10.2	0.5

Reference:

A.K.Bera, M.S.Hasson. Benzoylformate Decarboxylase H70A Mutant at pH 8.5 From Pseudomonas Putida To Be Published.

Page generated: Sun Sep 29 02:46:38 2024

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