Magnesium in PDB 5dtu: Crystal Structure of the Rna-Helicase PRP28 From Chaetomium Thermophilum Bound to Adp

The structure of Crystal Structure of the Rna-Helicase PRP28 From Chaetomium Thermophilum Bound to Adp, PDB code: 5dtu was solved by M.J.Tauchert, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.77 / 3.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	161.500, 50.400, 65.800, 90.00, 101.40, 90.00
R / Rfree (%)	27.4 / 28.8

The binding sites of Magnesium atom in the Crystal Structure of the Rna-Helicase PRP28 From Chaetomium Thermophilum Bound to Adp (pdb code 5dtu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Rna-Helicase PRP28 From Chaetomium Thermophilum Bound to Adp, PDB code: 5dtu:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Rna-Helicase PRP28 From Chaetomium Thermophilum Bound to Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Rna-Helicase PRP28 From Chaetomium Thermophilum Bound to Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:0.2 occ:1.00 O2B A:ADP801 2.1 99.4 1.0 O2A A:ADP801 2.1 65.9 1.0 PA A:ADP801 2.2 51.1 1.0 O3B A:ADP801 2.2 87.8 1.0 O1A A:ADP801 2.3 19.1 1.0 PB A:ADP801 2.3 88.9 1.0 N A:GLY325 2.6 37.6 1.0 O3A A:ADP801 2.6 0.1 1.0 CA A:GLY325 2.7 37.6 1.0 N A:LYS326 2.7 44.6 1.0 C A:GLY325 2.9 36.6 1.0 N A:THR327 3.5 35.1 1.0 CG A:LYS326 3.8 48.2 1.0 O5' A:ADP801 3.8 40.8 1.0 C A:SER324 3.8 42.8 1.0 O1B A:ADP801 3.8 91.6 1.0 CA A:LYS326 3.9 39.8 1.0 O A:GLY325 3.9 36.6 1.0 N A:SER324 3.9 48.0 1.0 OG1 A:THR327 4.0 35.3 1.0 C A:LYS326 4.2 34.9 1.0 CB A:THR327 4.2 37.1 1.0 C A:GLY323 4.3 52.5 1.0 CB A:LYS326 4.4 39.9 1.0 CA A:SER324 4.4 45.9 1.0 CA A:THR327 4.5 43.8 1.0 CA A:GLY323 4.6 52.4 1.0 C5' A:ADP801 4.6 33.3 1.0 N A:GLY323 4.6 39.7 1.0 O A:SER324 4.8 45.5 1.0 O A:GLY323 4.8 58.6 1.0 CB A:SER324 5.0 42.3 1.0

M.J.Tauchert, R.Ficner. Structural Analysis of the Spliceosomal Rna Helicase PRP28 From the Thermophilic Eukaryote Chaetomium Thermophilum. Acta Crystallogr.,Sect.F V. 72 409 2016.
ISSN: ESSN 2053-230X
PubMed: 27139834
DOI: 10.1107/S2053230X16006038