Magnesium in PDB 5e6f: Canarypox Virus Resolvase

The structure of Canarypox Virus Resolvase, PDB code: 5e6f was solved by H.Li, Y.Hwang, K.Perry, F.D.Bushman, G.D.Van Duyne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.60
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	89.117, 89.117, 117.945, 90.00, 90.00, 90.00
R / Rfree (%)	22.3 / 26.4

The binding sites of Magnesium atom in the Canarypox Virus Resolvase (pdb code 5e6f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Canarypox Virus Resolvase, PDB code: 5e6f:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Canarypox Virus Resolvase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Canarypox Virus Resolvase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:65.5 occ:1.00 O A:HOH316 2.0 53.0 1.0 O A:HOH310 2.0 52.3 1.0 O A:HOH307 2.1 44.8 1.0 O A:HOH302 2.3 55.2 1.0 OD2 A:ASP8 2.4 53.2 1.0 OD2 A:ASP131 2.4 63.9 1.0 CG A:ASP8 3.3 54.2 1.0 CG A:ASP131 3.3 64.1 1.0 OD1 A:ASP8 3.6 53.6 1.0 CB A:ASP131 3.8 62.3 1.0 CA A:ASP131 3.9 62.4 1.0 O A:ASN13 4.3 62.7 1.0 OD1 A:ASP131 4.3 66.8 1.0 OD1 A:ASP134 4.4 54.2 1.0 OD1 A:ASP130 4.4 68.3 1.0 O A:ILE9 4.5 54.1 1.0 N A:ASP131 4.5 63.6 1.0 CB A:ASP8 4.7 52.6 1.0 O A:ASP8 4.8 55.5 1.0

Magnesium binding site 2 out of 2 in the Canarypox Virus Resolvase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Canarypox Virus Resolvase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:67.8 occ:1.00 O B:HOH302 2.0 66.4 1.0 O B:HOH305 2.0 60.2 1.0 O B:HOH304 2.1 49.1 1.0 O B:HOH312 2.2 54.4 1.0 OD2 B:ASP8 2.3 57.4 1.0 OD1 B:ASP131 2.4 66.5 1.0 CG B:ASP8 3.0 57.8 1.0 OD1 B:ASP8 3.1 59.5 1.0 CG B:ASP131 3.5 68.2 1.0 CA B:ASP131 3.9 67.1 1.0 CB B:ASP131 3.9 67.2 1.0 O B:ASN13 4.2 63.1 1.0 OD2 B:ASP134 4.2 57.9 1.0 CB B:ASP8 4.5 54.9 1.0 O B:ILE9 4.5 54.1 1.0 OD2 B:ASP131 4.5 70.0 1.0 OD1 B:ASP130 4.6 70.6 1.0 O B:ASP8 4.6 55.7 1.0 N B:ASP131 4.7 67.7 1.0 O B:ASP130 4.9 67.3 1.0 NZ B:LYS101 5.0 86.3 1.0 C B:ASP131 5.0 66.4 1.0

H.Li, Y.Hwang, K.Perry, F.Bushman, G.D.Van Duyne. Structure and Metal Binding Properties of A Poxvirus Resolvase. J.Biol.Chem. V. 291 11094 2016.
ISSN: ESSN 1083-351X
PubMed: 27013661
DOI: 10.1074/JBC.M115.709139