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Magnesium in PDB 5ecr: Crystal Structure of FIN219-FIP1 Complex with Ja, Val and Mg

Enzymatic activity of Crystal Structure of FIN219-FIP1 Complex with Ja, Val and Mg

All present enzymatic activity of Crystal Structure of FIN219-FIP1 Complex with Ja, Val and Mg:
2.5.1.18;

Protein crystallography data

The structure of Crystal Structure of FIN219-FIP1 Complex with Ja, Val and Mg, PDB code: 5ecr was solved by C.Y.Chen, Y.S.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.21 / 1.72
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 53.841, 53.851, 193.644, 90.03, 90.04, 113.41
R / Rfree (%) 26.2 / 28.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of FIN219-FIP1 Complex with Ja, Val and Mg (pdb code 5ecr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of FIN219-FIP1 Complex with Ja, Val and Mg, PDB code: 5ecr:

Magnesium binding site 1 out of 1 in 5ecr

Go back to Magnesium Binding Sites List in 5ecr
Magnesium binding site 1 out of 1 in the Crystal Structure of FIN219-FIP1 Complex with Ja, Val and Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of FIN219-FIP1 Complex with Ja, Val and Mg within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg603

b:19.9
occ:1.00
O02 D:JAA601 1.9 19.9 1.0
O D:GLY331 2.6 17.7 1.0
C12 D:JAA601 2.9 19.8 1.0
O D:HOH731 3.0 10.7 1.0
O D:HIS534 3.2 12.6 1.0
C10 D:JAA601 3.4 20.8 1.0
O D:HOH714 3.6 19.1 1.0
CB D:SER332 3.7 9.6 1.0
C D:GLY331 3.7 16.1 1.0
CA D:SER332 3.8 12.8 1.0
C D:GLY537 3.9 16.3 1.0
O03 D:JAA601 4.0 12.9 1.0
N D:LEU538 4.0 18.1 1.0
C D:HIS534 4.0 10.0 1.0
CA D:HIS534 4.1 12.9 1.0
O D:HOH775 4.1 18.2 1.0
CH2 D:TRP336 4.2 11.5 1.0
CA D:GLY537 4.2 12.9 1.0
N D:SER332 4.2 14.8 1.0
OG D:SER332 4.3 8.4 1.0
CZ3 D:TRP336 4.3 13.2 1.0
O D:GLY537 4.3 22.9 1.0
O D:GLU533 4.4 10.9 1.0
CA D:LEU538 4.5 11.4 1.0
N D:VAL602 4.6 28.0 1.0
C04 D:JAA601 4.7 14.3 1.0
O D:HOH767 4.7 8.6 1.0
CB D:HIS534 4.7 12.7 1.0
N D:GLY537 4.8 8.4 1.0
CA D:VAL602 4.9 23.6 1.0
OXT D:VAL602 4.9 21.2 1.0
C06 D:JAA601 4.9 17.1 1.0
C D:VAL602 4.9 17.7 1.0
CZ2 D:TRP336 4.9 13.2 1.0

Reference:

C.Y.Chen, S.S.Ho, T.Y.Kuo, H.L.Hsieh, Y.S.Cheng. Structural Basis of Jasmonate-Amido Synthetase FIN219 in Complex with Glutathione S-Transferase FIP1 During the Ja Signal Regulation Proc. Natl. Acad. Sci. V. 114 E1815 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28223489
DOI: 10.1073/PNAS.1609980114
Page generated: Mon Dec 14 20:14:54 2020

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