Magnesium in PDB 5eg1: Antibacterial Peptide Abc Transporter Mcjd with A Resolved Lipid

The structure of Antibacterial Peptide Abc Transporter Mcjd with A Resolved Lipid, PDB code: 5eg1 was solved by H.G.Choudhury, K.Beis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.61 / 3.42
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	82.980, 109.130, 233.190, 90.00, 90.00, 90.00
R / Rfree (%)	25.4 / 27.2

The binding sites of Magnesium atom in the Antibacterial Peptide Abc Transporter Mcjd with A Resolved Lipid (pdb code 5eg1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Antibacterial Peptide Abc Transporter Mcjd with A Resolved Lipid, PDB code: 5eg1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Antibacterial Peptide Abc Transporter Mcjd with A Resolved Lipid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Antibacterial Peptide Abc Transporter Mcjd with A Resolved Lipid within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:84.1 occ:1.00 OG A:SER385 1.9 0.7 1.0 OE1 A:GLN426 2.0 1.0 1.0 O3G A:ANP601 2.0 0.5 1.0 O2B A:ANP601 2.6 0.6 1.0 CD A:GLN426 3.0 0.6 1.0 CB A:SER385 3.1 1.0 1.0 PG A:ANP601 3.3 1.0 1.0 PB A:ANP601 3.5 0.8 1.0 NE2 A:GLN426 3.6 0.2 1.0 N3B A:ANP601 3.6 0.5 1.0 O2A A:ANP601 3.7 0.8 1.0 OD1 A:ASP505 3.8 0.7 1.0 O2G A:ANP601 3.8 0.8 1.0 OD2 A:ASP505 3.8 0.3 1.0 O3A A:ANP601 3.8 0.1 1.0 N A:SER385 3.8 0.6 1.0 CA A:SER385 4.0 0.2 1.0 CG A:GLN426 4.1 0.4 1.0 CG A:ASP505 4.2 0.2 1.0 PA A:ANP601 4.3 0.2 1.0 OE1 A:GLU506 4.3 0.8 1.0 O1G A:ANP601 4.5 0.2 1.0 O1A A:ANP601 4.6 0.2 1.0 N B:GLY483 4.8 0.8 1.0 CB A:LYS384 4.8 0.0 1.0 O1B A:ANP601 4.9 0.8 1.0 CE A:LYS384 4.9 0.1 1.0 C A:LYS384 5.0 0.8 1.0 CB A:GLN426 5.0 0.6 1.0

Magnesium binding site 2 out of 2 in the Antibacterial Peptide Abc Transporter Mcjd with A Resolved Lipid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Antibacterial Peptide Abc Transporter Mcjd with A Resolved Lipid within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:91.1 occ:1.00 OG B:SER385 1.9 92.9 1.0 O3G B:ANP601 2.0 0.5 1.0 O2B B:ANP601 2.1 0.9 1.0 OE1 B:GLN426 2.2 0.3 1.0 CB B:SER385 3.1 90.5 1.0 PB B:ANP601 3.2 0.2 1.0 PG B:ANP601 3.2 0.8 1.0 CD B:GLN426 3.2 0.5 1.0 N3B B:ANP601 3.4 0.2 1.0 O3A B:ANP601 3.6 0.7 1.0 N B:SER385 3.7 89.3 1.0 OD1 B:ASP505 3.8 0.0 1.0 O2A B:ANP601 3.8 0.6 1.0 NE2 B:GLN426 3.8 0.7 1.0 OD2 B:ASP505 3.9 0.6 1.0 CA B:SER385 3.9 88.1 1.0 O2G B:ANP601 4.2 0.3 1.0 PA B:ANP601 4.2 0.7 1.0 O1G B:ANP601 4.2 0.3 1.0 CG B:ASP505 4.3 0.3 1.0 CG B:GLN426 4.4 0.8 1.0 OE1 B:GLU506 4.4 0.3 1.0 O1A B:ANP601 4.5 1.0 1.0 O1B B:ANP601 4.5 0.2 1.0 CB B:LYS384 4.7 0.6 1.0 CE B:LYS384 4.7 0.0 1.0 C B:LYS384 4.8 97.1 1.0 N A:GLY483 5.0 0.7 1.0

S.Mehmood, V.Corradi, H.G.Choudhury, R.Hussain, P.Becker, D.Axford, S.Zirah, S.Rebuffat, D.P.Tieleman, C.V.Robinson, K.Beis. Structural and Functional Basis For Lipid Synergy on the Activity of the Antibacterial Peptide Abc Transporter Mcjd. J.Biol.Chem. V. 291 21656 2016.
ISSN: ESSN 1083-351X
PubMed: 27555327
DOI: 10.1074/JBC.M116.732107