Magnesium in PDB 5ej0: The Vaccinia Virus H3 Envelope Protein, A Major Target of Neutralizing Antibodies, Exhibits A Glycosyltransferase Fold and Binds Udp-Glucose

The structure of The Vaccinia Virus H3 Envelope Protein, A Major Target of Neutralizing Antibodies, Exhibits A Glycosyltransferase Fold and Binds Udp-Glucose, PDB code: 5ej0 was solved by K.Singh, A.G.Gittis, R.K.Gitti, S.A.Ostazesky, H.P.Su, D.N.Garboczi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.22 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.360, 54.790, 111.990, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 24

The binding sites of Magnesium atom in the The Vaccinia Virus H3 Envelope Protein, A Major Target of Neutralizing Antibodies, Exhibits A Glycosyltransferase Fold and Binds Udp-Glucose (pdb code 5ej0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Vaccinia Virus H3 Envelope Protein, A Major Target of Neutralizing Antibodies, Exhibits A Glycosyltransferase Fold and Binds Udp-Glucose, PDB code: 5ej0:

Magnesium binding site 1 out of 1 in the The Vaccinia Virus H3 Envelope Protein, A Major Target of Neutralizing Antibodies, Exhibits A Glycosyltransferase Fold and Binds Udp-Glucose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Vaccinia Virus H3 Envelope Protein, A Major Target of Neutralizing Antibodies, Exhibits A Glycosyltransferase Fold and Binds Udp-Glucose within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg725 b:34.5 occ:1.00 OG A:SER186 2.6 31.9 1.0 OE1 A:GLU125 2.6 20.5 1.0 OD1 A:ASP127 2.7 25.4 1.0 O1 A:PDO710 2.9 46.8 0.8 CE1 A:HIS239 3.1 45.8 1.0 OD2 A:ASP127 3.2 33.5 1.0 O A:MOH722 3.2 43.4 0.9 CG A:ASP127 3.3 30.0 1.0 CB A:SER186 3.3 21.6 1.0 C A:MOH722 3.4 40.0 0.9 C1 A:PDO710 3.5 39.9 0.8 ND1 A:HIS239 3.7 43.0 1.0 CB A:GLU125 3.7 21.0 1.0 CA A:SER186 3.7 19.7 1.0 CD A:GLU125 3.7 22.4 1.0 ND2 A:ASN128 3.9 23.8 1.0 C2 A:PDO710 4.0 40.3 0.8 NE2 A:HIS239 4.2 49.7 1.0 C3 A:PDO710 4.2 31.3 0.8 CG A:GLU125 4.3 18.0 1.0 O A:SER186 4.4 18.8 1.0 C A:SER186 4.5 19.6 1.0 CG A:ASN128 4.6 24.4 1.0 OD1 A:ASN128 4.6 26.6 1.0 CB A:ASP127 4.8 29.9 1.0 OE2 A:GLU125 4.8 20.1 1.0 N A:SER186 4.9 18.2 1.0 CG2 A:VAL13 4.9 26.1 1.0 NH1 A:ARG154 4.9 45.0 1.0 CG A:HIS239 5.0 43.4 1.0 CA A:GLU125 5.0 19.8 1.0

K.Singh, A.G.Gittis, R.K.Gitti, S.A.Ostazeski, H.P.Su, D.N.Garboczi. The Vaccinia Virus H3 Envelope Protein, A Major Target of Neutralizing Antibodies, Exhibits A Glycosyltransferase Fold and Binds Udp-Glucose. J.Virol. V. 90 5020 2016.
ISSN: ESSN 1098-5514
PubMed: 26937025
DOI: 10.1128/JVI.02933-15