Magnesium in PDB 5eoy: Pseudomonas Aeruginosa Semet-Pilm Bound to Adp

The structure of Pseudomonas Aeruginosa Semet-Pilm Bound to Adp, PDB code: 5eoy was solved by M.Mccallum, S.Tammam, H.Robinson, M.Shah, C.Calmettes, T.Moraes, L.L.Burrows, P.L.Howell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.07 / 2.50
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.575, 110.750, 151.995, 90.00, 90.00, 90.00
R / Rfree (%)	21.3 / 26.1

The binding sites of Magnesium atom in the Pseudomonas Aeruginosa Semet-Pilm Bound to Adp (pdb code 5eoy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Pseudomonas Aeruginosa Semet-Pilm Bound to Adp, PDB code: 5eoy:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Pseudomonas Aeruginosa Semet-Pilm Bound to Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pseudomonas Aeruginosa Semet-Pilm Bound to Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:86.0 occ:1.00 O3B A:ADP401 1.8 82.5 1.0 O A:HOH513 2.2 84.7 1.0 O A:HOH526 2.2 61.8 1.0 O A:HOH539 2.2 74.0 1.0 O A:HOH519 2.2 73.0 1.0 O A:HOH501 2.2 91.1 1.0 PB A:ADP401 3.1 72.8 1.0 O2B A:ADP401 3.7 78.3 1.0 O1A A:ADP401 3.7 69.9 1.0 O1B A:ADP401 3.8 76.1 1.0 NZ A:LYS23 4.3 49.5 1.0 O3A A:ADP401 4.3 65.4 1.0 CB A:SER18 4.3 52.5 1.0 OD2 A:ASP199 4.4 62.8 1.0 OD2 A:ASP16 4.4 43.3 1.0 PA A:ADP401 4.6 60.7 1.0 OD1 A:ASP199 4.6 59.2 1.0 CA A:GLY201 4.9 72.1 1.0 CG A:ASP199 4.9 57.1 1.0 OG A:SER18 4.9 54.5 1.0

Magnesium binding site 2 out of 3 in the Pseudomonas Aeruginosa Semet-Pilm Bound to Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pseudomonas Aeruginosa Semet-Pilm Bound to Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:99.5 occ:1.00 O A:HOH520 2.2 45.9 1.0 O A:HOH533 2.2 69.2 1.0 O A:ILE115 2.4 53.0 1.0 O A:ASP112 2.7 52.3 1.0 C A:ILE115 3.5 53.1 1.0 C A:ASP112 3.8 54.3 1.0 OD1 A:ASP112 4.2 61.9 1.0 CA A:PRO116 4.3 54.0 1.0 O A:TYR117 4.3 45.2 1.0 N A:PRO116 4.3 56.0 1.0 N A:ILE115 4.4 54.8 1.0 CG A:ASP112 4.4 57.4 1.0 OD2 A:ASP112 4.4 58.0 1.0 CA A:ILE115 4.5 52.5 1.0 N A:TYR117 4.6 48.1 1.0 C A:GLN113 4.6 60.7 1.0 C A:PRO116 4.7 51.2 1.0 O A:GLN113 4.7 68.1 1.0 CA A:ASP112 4.7 54.4 1.0 CG1 A:ILE115 4.8 55.3 1.0 N A:GLN113 4.8 55.3 1.0 CA A:GLN113 4.8 60.2 1.0

Magnesium binding site 3 out of 3 in the Pseudomonas Aeruginosa Semet-Pilm Bound to Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Pseudomonas Aeruginosa Semet-Pilm Bound to Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:85.4 occ:1.00 O1B B:ADP401 1.8 81.6 1.0 O B:HOH508 2.1 75.8 1.0 O B:HOH502 2.1 74.3 1.0 O B:HOH507 2.2 59.8 1.0 O B:HOH537 2.2 95.4 1.0 PB B:ADP401 3.3 71.5 1.0 O2A B:ADP401 3.7 68.2 1.0 O2B B:ADP401 4.1 71.8 1.0 O3A B:ADP401 4.1 79.3 1.0 CB B:SER18 4.1 48.4 1.0 OD2 B:ASP16 4.1 48.0 1.0 O3B B:ADP401 4.2 76.5 1.0 O B:HOH516 4.4 55.9 1.0 NZ B:LYS23 4.5 50.3 1.0 OD2 B:ASP199 4.5 58.1 1.0 PA B:ADP401 4.6 62.4 1.0 OD1 B:ASP199 4.7 59.0 1.0 OD1 B:ASP16 4.9 46.0 1.0 OG B:SER18 4.9 52.0 1.0 CG B:ASP16 4.9 46.1 1.0 CG B:ASP199 5.0 56.2 1.0

M.Mccallum, S.Tammam, D.J.Little, H.Robinson, J.Koo, M.Shah, C.Calmettes, T.F.Moraes, L.L.Burrows, P.L.Howell. Piln Binding Modulates the Structure and Binding Partners of the Pseudomonas Aeruginosa Type Iva Pilus Protein Pilm. J.Biol.Chem. V. 291 11003 2016.
ISSN: ESSN 1083-351X
PubMed: 27022027
DOI: 10.1074/JBC.M116.718353