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Magnesium in PDB 5erv: Ternary Complex of Gephe - Adp - Tungsten Cluster

Enzymatic activity of Ternary Complex of Gephe - Adp - Tungsten Cluster

All present enzymatic activity of Ternary Complex of Gephe - Adp - Tungsten Cluster:
2.10.1.1; 2.7.7.75;

Protein crystallography data

The structure of Ternary Complex of Gephe - Adp - Tungsten Cluster, PDB code: 5erv was solved by V.B.Kasaragod, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.83 / 1.80
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 87.661, 99.675, 113.237, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 20.3

Other elements in 5erv:

The structure of Ternary Complex of Gephe - Adp - Tungsten Cluster also contains other interesting chemical elements:

Tungsten (W) 10 atoms
Calcium (Ca) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ternary Complex of Gephe - Adp - Tungsten Cluster (pdb code 5erv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ternary Complex of Gephe - Adp - Tungsten Cluster, PDB code: 5erv:

Magnesium binding site 1 out of 1 in 5erv

Go back to Magnesium Binding Sites List in 5erv
Magnesium binding site 1 out of 1 in the Ternary Complex of Gephe - Adp - Tungsten Cluster


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ternary Complex of Gephe - Adp - Tungsten Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:28.0
occ:1.00
O2A A:ADP801 2.1 24.5 1.0
O3B A:ADP801 2.3 31.2 1.0
O A:HOH1168 2.3 40.5 1.0
OD2 A:ASP580 2.5 32.2 1.0
O A:HOH1027 2.8 37.5 1.0
OD1 A:ASP580 2.9 38.4 1.0
HB2 A:SER575 3.0 43.3 1.0
CG A:ASP580 3.1 43.5 1.0
PA A:ADP801 3.3 18.8 1.0
PB A:ADP801 3.5 17.2 0.6
O1A A:ADP801 3.7 19.0 1.0
H A:SER575 3.8 26.2 1.0
O3A A:ADP801 3.8 24.4 1.0
CB A:SER575 3.9 36.1 1.0
O A:HOH940 4.0 58.9 1.0
HA2 A:GLY573 4.1 23.3 1.0
H A:GLY573 4.1 23.0 1.0
O A:HOH1151 4.1 40.9 1.0
O2B A:ADP801 4.2 34.3 1.0
HA3 A:GLY577 4.3 62.6 1.0
H A:GLY577 4.3 50.1 1.0
O A:HOH992 4.4 23.5 1.0
HG A:SER575 4.4 47.6 1.0
HB3 A:SER575 4.4 43.3 1.0
CA A:CA814 4.5 21.4 1.0
OG A:SER575 4.5 39.7 1.0
N A:SER575 4.6 21.8 1.0
CB A:ASP580 4.6 24.8 1.0
O5' A:ADP801 4.6 14.8 1.0
H5'2 A:ADP801 4.6 16.8 1.0
O1B A:ADP801 4.7 32.1 1.0
H A:VAL574 4.7 19.8 1.0
CA A:SER575 4.8 34.8 1.0
N A:GLY573 4.8 19.1 1.0
CA A:GLY573 4.8 19.4 1.0
HB3 A:ASP580 4.8 29.8 1.0
HB2 A:ASP580 4.9 29.8 1.0

Reference:

V.B.Kasaragod, H.Schindelin. Structural Framework For Metal Incorporation During Molybdenum Cofactor Biosynthesis. Structure V. 24 782 2016.
ISSN: ISSN 0969-2126
PubMed: 27112598
DOI: 10.1016/J.STR.2016.02.023
Page generated: Mon Dec 14 20:15:56 2020

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