Magnesium in PDB 5eu9: Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Enzymatic activity of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
All present enzymatic activity of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid:
4.2.1.11;
Protein crystallography data
The structure of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid, PDB code: 5eu9
was solved by
P.G.Leonard,
F.L.Muller,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
89.93 /
2.05
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
119.251,
110.310,
136.930,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.4 /
19.2
|
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Magnesium atom in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
(pdb code 5eu9). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the
Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid, PDB code: 5eu9:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 16 in 5eu9
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Magnesium Binding Sites List in 5eu9
Magnesium binding site 1 out
of 16 in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg500
b:13.2
occ:1.00
|
O06
|
A:5TX502
|
2.0
|
14.6
|
1.0
|
O
|
A:SER40
|
2.1
|
15.7
|
1.0
|
O
|
A:HOH676
|
2.1
|
15.6
|
1.0
|
O
|
A:HOH659
|
2.1
|
17.2
|
1.0
|
OG
|
A:SER40
|
2.2
|
16.3
|
1.0
|
O10
|
A:5TX502
|
2.2
|
14.5
|
1.0
|
C
|
A:SER40
|
2.9
|
19.5
|
1.0
|
C04
|
A:5TX502
|
3.0
|
15.6
|
1.0
|
CB
|
A:SER40
|
3.1
|
13.8
|
1.0
|
P05
|
A:5TX502
|
3.1
|
13.9
|
1.0
|
CA
|
A:SER40
|
3.4
|
18.0
|
1.0
|
C03
|
A:5TX502
|
3.5
|
13.9
|
1.0
|
N
|
A:SER40
|
3.7
|
17.4
|
1.0
|
C09
|
A:5TX502
|
3.7
|
13.1
|
1.0
|
O07
|
A:5TX502
|
3.7
|
11.0
|
1.0
|
OD1
|
A:ASP318
|
4.1
|
15.0
|
1.0
|
OD1
|
A:ASP319
|
4.1
|
15.9
|
1.0
|
N
|
A:THR41
|
4.1
|
15.7
|
1.0
|
OD2
|
A:ASP319
|
4.1
|
21.7
|
1.0
|
N12
|
A:5TX502
|
4.2
|
10.9
|
1.0
|
MG
|
A:MG501
|
4.2
|
15.3
|
1.0
|
NE2
|
A:GLN166
|
4.3
|
8.5
|
1.0
|
OE1
|
A:GLN166
|
4.3
|
14.8
|
1.0
|
O
|
A:HOH628
|
4.4
|
16.1
|
1.0
|
O08
|
A:5TX502
|
4.4
|
12.6
|
1.0
|
NZ
|
A:LYS343
|
4.5
|
9.6
|
1.0
|
CG
|
A:ASP319
|
4.6
|
22.7
|
1.0
|
NH2
|
A:ARG372
|
4.6
|
10.8
|
1.0
|
CA
|
A:THR41
|
4.6
|
14.9
|
1.0
|
O11
|
A:5TX502
|
4.7
|
14.0
|
1.0
|
CD
|
A:GLN166
|
4.8
|
16.9
|
1.0
|
C02
|
A:5TX502
|
4.9
|
13.8
|
1.0
|
|
Magnesium binding site 2 out
of 16 in 5eu9
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Magnesium Binding Sites List in 5eu9
Magnesium binding site 2 out
of 16 in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg501
b:15.3
occ:1.00
|
OE2
|
A:GLU293
|
1.9
|
15.5
|
1.0
|
O11
|
A:5TX502
|
2.1
|
14.0
|
1.0
|
OD1
|
A:ASP318
|
2.1
|
15.0
|
1.0
|
O
|
A:HOH628
|
2.1
|
16.1
|
1.0
|
OD1
|
A:ASP245
|
2.2
|
17.4
|
1.0
|
O10
|
A:5TX502
|
2.5
|
14.5
|
1.0
|
N12
|
A:5TX502
|
2.9
|
10.9
|
1.0
|
CG
|
A:ASP245
|
3.0
|
18.5
|
1.0
|
CD
|
A:GLU293
|
3.1
|
15.4
|
1.0
|
C04
|
A:5TX502
|
3.2
|
15.6
|
1.0
|
CG
|
A:ASP318
|
3.2
|
16.2
|
1.0
|
OD2
|
A:ASP245
|
3.3
|
9.6
|
1.0
|
CB
|
A:ASP318
|
3.7
|
13.7
|
1.0
|
O
|
A:HOH676
|
3.8
|
15.6
|
1.0
|
NZ
|
A:LYS343
|
3.8
|
9.6
|
1.0
|
NZ
|
A:LYS394
|
3.8
|
15.8
|
1.0
|
O
|
A:HOH659
|
3.9
|
17.2
|
1.0
|
OE1
|
A:GLU293
|
3.9
|
17.1
|
1.0
|
OE1
|
A:GLN166
|
3.9
|
14.8
|
1.0
|
CG
|
A:GLU293
|
4.0
|
11.8
|
1.0
|
OD2
|
A:ASP318
|
4.2
|
12.8
|
1.0
|
MG
|
A:MG500
|
4.2
|
13.2
|
1.0
|
CD2
|
A:LEU341
|
4.2
|
14.2
|
1.0
|
OD2
|
A:ASP294
|
4.2
|
14.8
|
1.0
|
C01
|
A:5TX502
|
4.3
|
13.9
|
1.0
|
CB
|
A:ASP245
|
4.4
|
11.1
|
1.0
|
C03
|
A:5TX502
|
4.6
|
13.9
|
1.0
|
O13
|
A:5TX502
|
4.7
|
17.5
|
1.0
|
OE2
|
A:GLU167
|
4.8
|
17.6
|
1.0
|
CE
|
A:LYS394
|
4.8
|
16.9
|
1.0
|
|
Magnesium binding site 3 out
of 16 in 5eu9
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Magnesium Binding Sites List in 5eu9
Magnesium binding site 3 out
of 16 in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg500
b:10.4
occ:1.00
|
O
|
B:SER40
|
2.0
|
12.1
|
1.0
|
O06
|
B:5TX502
|
2.0
|
11.8
|
1.0
|
O
|
B:HOH659
|
2.1
|
12.8
|
1.0
|
OG
|
B:SER40
|
2.1
|
15.3
|
1.0
|
O
|
B:HOH720
|
2.1
|
11.2
|
1.0
|
O10
|
B:5TX502
|
2.2
|
13.3
|
1.0
|
C
|
B:SER40
|
2.9
|
16.6
|
1.0
|
C04
|
B:5TX502
|
3.0
|
12.5
|
1.0
|
CB
|
B:SER40
|
3.1
|
14.1
|
1.0
|
P05
|
B:5TX502
|
3.3
|
10.7
|
1.0
|
CA
|
B:SER40
|
3.4
|
15.1
|
1.0
|
C03
|
B:5TX502
|
3.5
|
13.7
|
1.0
|
N
|
B:SER40
|
3.7
|
14.5
|
1.0
|
C09
|
B:5TX502
|
3.8
|
15.7
|
1.0
|
O08
|
B:5TX502
|
3.8
|
10.5
|
1.0
|
N
|
B:THR41
|
4.1
|
15.9
|
1.0
|
OD2
|
B:ASP319
|
4.1
|
16.9
|
1.0
|
OD1
|
B:ASP318
|
4.1
|
10.0
|
1.0
|
OD1
|
B:ASP319
|
4.1
|
13.1
|
1.0
|
N12
|
B:5TX502
|
4.2
|
10.2
|
1.0
|
MG
|
B:MG501
|
4.3
|
13.4
|
1.0
|
NE2
|
B:GLN166
|
4.4
|
7.8
|
1.0
|
O
|
B:HOH625
|
4.4
|
9.6
|
1.0
|
OE1
|
B:GLN166
|
4.4
|
15.3
|
1.0
|
NZ
|
B:LYS343
|
4.5
|
10.1
|
1.0
|
O07
|
B:5TX502
|
4.5
|
12.5
|
1.0
|
CG
|
B:ASP319
|
4.5
|
16.9
|
1.0
|
NH2
|
B:ARG372
|
4.6
|
9.4
|
1.0
|
CA
|
B:THR41
|
4.6
|
16.1
|
1.0
|
O11
|
B:5TX502
|
4.7
|
12.4
|
1.0
|
CD
|
B:GLN166
|
4.9
|
14.3
|
1.0
|
C02
|
B:5TX502
|
4.9
|
13.4
|
1.0
|
|
Magnesium binding site 4 out
of 16 in 5eu9
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Magnesium Binding Sites List in 5eu9
Magnesium binding site 4 out
of 16 in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg501
b:13.4
occ:1.00
|
OE2
|
B:GLU293
|
2.0
|
12.5
|
1.0
|
O11
|
B:5TX502
|
2.1
|
12.4
|
1.0
|
OD1
|
B:ASP245
|
2.1
|
11.9
|
1.0
|
O
|
B:HOH625
|
2.1
|
9.6
|
1.0
|
OD1
|
B:ASP318
|
2.1
|
10.0
|
1.0
|
O10
|
B:5TX502
|
2.6
|
13.3
|
1.0
|
N12
|
B:5TX502
|
2.9
|
10.2
|
1.0
|
CG
|
B:ASP245
|
3.0
|
13.7
|
1.0
|
CD
|
B:GLU293
|
3.1
|
13.0
|
1.0
|
CG
|
B:ASP318
|
3.2
|
12.6
|
1.0
|
C04
|
B:5TX502
|
3.2
|
12.5
|
1.0
|
OD2
|
B:ASP245
|
3.3
|
12.7
|
1.0
|
NZ
|
B:LYS394
|
3.7
|
13.3
|
1.0
|
CB
|
B:ASP318
|
3.8
|
12.4
|
1.0
|
O
|
B:HOH659
|
3.8
|
12.8
|
1.0
|
NZ
|
B:LYS343
|
3.9
|
10.1
|
1.0
|
OE1
|
B:GLU293
|
3.9
|
12.7
|
1.0
|
NE2
|
B:GLN166
|
4.0
|
7.8
|
1.0
|
O
|
B:HOH720
|
4.0
|
11.2
|
1.0
|
CG
|
B:GLU293
|
4.0
|
9.3
|
1.0
|
CD2
|
B:LEU341
|
4.2
|
12.1
|
1.0
|
OD2
|
B:ASP318
|
4.2
|
13.2
|
1.0
|
MG
|
B:MG500
|
4.3
|
10.4
|
1.0
|
OD2
|
B:ASP294
|
4.3
|
14.6
|
1.0
|
CB
|
B:ASP245
|
4.3
|
10.9
|
1.0
|
C01
|
B:5TX502
|
4.3
|
12.6
|
1.0
|
C03
|
B:5TX502
|
4.6
|
13.7
|
1.0
|
O13
|
B:5TX502
|
4.7
|
15.1
|
1.0
|
CE
|
B:LYS394
|
4.7
|
12.8
|
1.0
|
OE2
|
B:GLU167
|
4.8
|
17.6
|
1.0
|
|
Magnesium binding site 5 out
of 16 in 5eu9
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Magnesium Binding Sites List in 5eu9
Magnesium binding site 5 out
of 16 in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg500
b:15.8
occ:1.00
|
OD1
|
C:ASP318
|
2.1
|
12.8
|
1.0
|
OE2
|
C:GLU293
|
2.1
|
16.9
|
1.0
|
O
|
C:HOH630
|
2.1
|
16.1
|
1.0
|
O11
|
C:5TX503
|
2.1
|
15.3
|
1.0
|
OD1
|
C:ASP245
|
2.2
|
20.3
|
1.0
|
O10
|
C:5TX503
|
2.6
|
15.1
|
1.0
|
N12
|
C:5TX503
|
3.0
|
15.9
|
1.0
|
CG
|
C:ASP245
|
3.0
|
18.1
|
1.0
|
CG
|
C:ASP318
|
3.1
|
13.3
|
1.0
|
C04
|
C:5TX503
|
3.2
|
15.6
|
1.0
|
CD
|
C:GLU293
|
3.3
|
18.1
|
1.0
|
OD2
|
C:ASP245
|
3.3
|
13.6
|
1.0
|
CB
|
C:ASP318
|
3.7
|
12.7
|
1.0
|
NZ
|
C:LYS394
|
3.7
|
16.0
|
1.0
|
NZ
|
C:LYS343
|
3.8
|
11.1
|
1.0
|
O
|
C:HOH744
|
3.9
|
15.6
|
1.0
|
O
|
C:HOH640
|
3.9
|
17.4
|
1.0
|
OE1
|
C:GLN166
|
4.0
|
17.5
|
1.0
|
OE1
|
C:GLU293
|
4.0
|
18.9
|
1.0
|
MG
|
C:MG501
|
4.1
|
14.8
|
1.0
|
OD2
|
C:ASP318
|
4.2
|
13.0
|
1.0
|
CD2
|
C:LEU341
|
4.2
|
13.6
|
1.0
|
CG
|
C:GLU293
|
4.2
|
13.5
|
1.0
|
C01
|
C:5TX503
|
4.4
|
13.1
|
1.0
|
CB
|
C:ASP245
|
4.4
|
12.4
|
1.0
|
OD2
|
C:ASP294
|
4.4
|
19.8
|
1.0
|
C03
|
C:5TX503
|
4.6
|
18.5
|
1.0
|
CE
|
C:LYS394
|
4.8
|
16.2
|
1.0
|
O13
|
C:5TX503
|
4.8
|
13.4
|
1.0
|
OE2
|
C:GLU167
|
4.8
|
20.8
|
1.0
|
CE
|
C:LYS343
|
4.9
|
12.5
|
1.0
|
|
Magnesium binding site 6 out
of 16 in 5eu9
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Magnesium Binding Sites List in 5eu9
Magnesium binding site 6 out
of 16 in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg501
b:14.8
occ:1.00
|
O06
|
C:5TX503
|
2.0
|
18.0
|
1.0
|
O
|
C:HOH744
|
2.0
|
15.6
|
1.0
|
OG
|
C:SER40
|
2.1
|
18.1
|
1.0
|
O
|
C:SER40
|
2.1
|
15.6
|
1.0
|
O
|
C:HOH640
|
2.1
|
17.4
|
1.0
|
O10
|
C:5TX503
|
2.2
|
15.1
|
1.0
|
C
|
C:SER40
|
3.0
|
15.0
|
1.0
|
C04
|
C:5TX503
|
3.0
|
15.6
|
1.0
|
CB
|
C:SER40
|
3.1
|
17.4
|
1.0
|
P05
|
C:5TX503
|
3.2
|
13.6
|
1.0
|
CA
|
C:SER40
|
3.4
|
16.4
|
1.0
|
C03
|
C:5TX503
|
3.5
|
18.5
|
1.0
|
N
|
C:SER40
|
3.7
|
18.3
|
1.0
|
O07
|
C:5TX503
|
3.7
|
12.5
|
1.0
|
C09
|
C:5TX503
|
3.8
|
16.4
|
1.0
|
OD1
|
C:ASP318
|
4.0
|
12.8
|
1.0
|
OD2
|
C:ASP319
|
4.1
|
16.8
|
1.0
|
MG
|
C:MG500
|
4.1
|
15.8
|
1.0
|
OD1
|
C:ASP319
|
4.2
|
14.5
|
1.0
|
N12
|
C:5TX503
|
4.2
|
15.9
|
1.0
|
N
|
C:THR41
|
4.2
|
16.9
|
1.0
|
NE2
|
C:GLN166
|
4.2
|
9.6
|
1.0
|
O
|
C:HOH630
|
4.3
|
16.1
|
1.0
|
NZ
|
C:LYS343
|
4.3
|
11.1
|
1.0
|
OE1
|
C:GLN166
|
4.4
|
17.5
|
1.0
|
O08
|
C:5TX503
|
4.5
|
10.3
|
1.0
|
NH2
|
C:ARG372
|
4.5
|
12.2
|
1.0
|
CG
|
C:ASP319
|
4.6
|
19.3
|
1.0
|
CA
|
C:THR41
|
4.7
|
17.2
|
1.0
|
O11
|
C:5TX503
|
4.7
|
15.3
|
1.0
|
CD
|
C:GLN166
|
4.8
|
19.3
|
1.0
|
C02
|
C:5TX503
|
5.0
|
11.4
|
1.0
|
|
Magnesium binding site 7 out
of 16 in 5eu9
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Magnesium Binding Sites List in 5eu9
Magnesium binding site 7 out
of 16 in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg500
b:16.3
occ:1.00
|
OE2
|
D:GLU293
|
1.9
|
13.9
|
1.0
|
O11
|
D:5TX503
|
2.0
|
14.3
|
1.0
|
O
|
D:HOH613
|
2.1
|
11.3
|
1.0
|
OD1
|
D:ASP318
|
2.1
|
12.8
|
1.0
|
OD1
|
D:ASP245
|
2.2
|
13.1
|
1.0
|
O10
|
D:5TX503
|
2.6
|
10.9
|
1.0
|
N12
|
D:5TX503
|
2.9
|
13.9
|
1.0
|
CG
|
D:ASP245
|
3.0
|
13.1
|
1.0
|
CD
|
D:GLU293
|
3.1
|
16.0
|
1.0
|
OD2
|
D:ASP245
|
3.2
|
11.1
|
1.0
|
CG
|
D:ASP318
|
3.2
|
11.8
|
1.0
|
C04
|
D:5TX503
|
3.2
|
14.1
|
1.0
|
NZ
|
D:LYS394
|
3.7
|
13.0
|
1.0
|
CB
|
D:ASP318
|
3.7
|
10.0
|
1.0
|
O
|
D:HOH687
|
3.8
|
10.7
|
1.0
|
OE1
|
D:GLU293
|
3.8
|
17.2
|
1.0
|
NZ
|
D:LYS343
|
3.9
|
12.6
|
1.0
|
O
|
D:HOH742
|
4.0
|
15.6
|
1.0
|
OE1
|
D:GLN166
|
4.0
|
14.7
|
1.0
|
CG
|
D:GLU293
|
4.1
|
11.3
|
1.0
|
OD2
|
D:ASP318
|
4.2
|
12.3
|
1.0
|
CD2
|
D:LEU341
|
4.2
|
10.3
|
1.0
|
MG
|
D:MG501
|
4.2
|
12.9
|
1.0
|
OD2
|
D:ASP294
|
4.3
|
15.8
|
1.0
|
C01
|
D:5TX503
|
4.3
|
14.4
|
1.0
|
CB
|
D:ASP245
|
4.3
|
11.6
|
1.0
|
C03
|
D:5TX503
|
4.6
|
15.3
|
1.0
|
O13
|
D:5TX503
|
4.6
|
16.7
|
1.0
|
CE
|
D:LYS394
|
4.8
|
10.2
|
1.0
|
OE2
|
D:GLU167
|
4.8
|
20.4
|
1.0
|
|
Magnesium binding site 8 out
of 16 in 5eu9
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Magnesium Binding Sites List in 5eu9
Magnesium binding site 8 out
of 16 in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg501
b:12.9
occ:1.00
|
O
|
D:HOH742
|
2.1
|
15.6
|
1.0
|
O06
|
D:5TX503
|
2.1
|
11.2
|
1.0
|
OG
|
D:SER40
|
2.1
|
14.1
|
1.0
|
O
|
D:HOH687
|
2.1
|
10.7
|
1.0
|
O
|
D:SER40
|
2.1
|
14.9
|
1.0
|
O10
|
D:5TX503
|
2.2
|
10.9
|
1.0
|
C04
|
D:5TX503
|
3.0
|
14.1
|
1.0
|
C
|
D:SER40
|
3.0
|
18.2
|
1.0
|
CB
|
D:SER40
|
3.1
|
9.8
|
1.0
|
P05
|
D:5TX503
|
3.3
|
15.2
|
1.0
|
CA
|
D:SER40
|
3.4
|
17.0
|
1.0
|
C03
|
D:5TX503
|
3.5
|
15.3
|
1.0
|
N
|
D:SER40
|
3.7
|
14.8
|
1.0
|
O08
|
D:5TX503
|
3.8
|
11.0
|
1.0
|
C09
|
D:5TX503
|
3.8
|
11.7
|
1.0
|
OD1
|
D:ASP318
|
4.0
|
12.8
|
1.0
|
OD2
|
D:ASP319
|
4.1
|
16.9
|
1.0
|
N12
|
D:5TX503
|
4.1
|
13.9
|
1.0
|
N
|
D:THR41
|
4.2
|
17.0
|
1.0
|
OD1
|
D:ASP319
|
4.2
|
13.8
|
1.0
|
MG
|
D:MG500
|
4.2
|
16.3
|
1.0
|
OE1
|
D:GLN166
|
4.3
|
14.7
|
1.0
|
O
|
D:HOH613
|
4.3
|
11.3
|
1.0
|
NE2
|
D:GLN166
|
4.4
|
10.0
|
1.0
|
NZ
|
D:LYS343
|
4.4
|
12.6
|
1.0
|
O07
|
D:5TX503
|
4.5
|
13.7
|
1.0
|
NH2
|
D:ARG372
|
4.6
|
13.3
|
1.0
|
CG
|
D:ASP319
|
4.6
|
17.9
|
1.0
|
CA
|
D:THR41
|
4.6
|
16.0
|
1.0
|
O11
|
D:5TX503
|
4.7
|
14.3
|
1.0
|
CD
|
D:GLN166
|
4.8
|
13.1
|
1.0
|
C02
|
D:5TX503
|
5.0
|
12.9
|
1.0
|
|
Magnesium binding site 9 out
of 16 in 5eu9
Go back to
Magnesium Binding Sites List in 5eu9
Magnesium binding site 9 out
of 16 in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg500
b:14.0
occ:1.00
|
O11
|
E:5TX503
|
2.0
|
12.6
|
1.0
|
OE2
|
E:GLU293
|
2.1
|
12.3
|
1.0
|
O
|
E:HOH643
|
2.1
|
6.5
|
1.0
|
OD1
|
E:ASP245
|
2.1
|
14.9
|
1.0
|
OD1
|
E:ASP318
|
2.1
|
11.0
|
1.0
|
O10
|
E:5TX503
|
2.5
|
11.4
|
1.0
|
N12
|
E:5TX503
|
2.9
|
11.4
|
1.0
|
CG
|
E:ASP245
|
3.0
|
15.1
|
1.0
|
C04
|
E:5TX503
|
3.2
|
13.2
|
1.0
|
CG
|
E:ASP318
|
3.2
|
11.4
|
1.0
|
CD
|
E:GLU293
|
3.2
|
14.6
|
1.0
|
OD2
|
E:ASP245
|
3.3
|
12.8
|
1.0
|
CB
|
E:ASP318
|
3.7
|
11.6
|
1.0
|
NZ
|
E:LYS394
|
3.8
|
18.8
|
1.0
|
O
|
E:HOH683
|
3.9
|
16.0
|
1.0
|
NZ
|
E:LYS343
|
3.9
|
10.8
|
1.0
|
O
|
E:HOH695
|
3.9
|
11.2
|
1.0
|
NE2
|
E:GLN166
|
4.0
|
10.3
|
1.0
|
OE1
|
E:GLU293
|
4.0
|
11.8
|
1.0
|
CG
|
E:GLU293
|
4.2
|
9.3
|
1.0
|
OD2
|
E:ASP318
|
4.2
|
11.7
|
1.0
|
OD2
|
E:ASP294
|
4.2
|
12.3
|
1.0
|
CD2
|
E:LEU341
|
4.3
|
7.4
|
1.0
|
C01
|
E:5TX503
|
4.3
|
10.7
|
1.0
|
MG
|
E:MG501
|
4.3
|
16.1
|
1.0
|
CB
|
E:ASP245
|
4.4
|
9.9
|
1.0
|
C03
|
E:5TX503
|
4.6
|
13.9
|
1.0
|
O13
|
E:5TX503
|
4.7
|
14.9
|
1.0
|
CE
|
E:LYS394
|
4.9
|
11.6
|
1.0
|
OE2
|
E:GLU167
|
4.9
|
17.7
|
1.0
|
|
Magnesium binding site 10 out
of 16 in 5eu9
Go back to
Magnesium Binding Sites List in 5eu9
Magnesium binding site 10 out
of 16 in the Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Human Enolase 2 in Complex with ((3S,5S)-1,5-Dihydroxy-3- Methyl-2-Oxopyrrolidin-3-Yl)Phosphonic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg501
b:16.1
occ:1.00
|
O06
|
E:5TX503
|
1.9
|
14.2
|
1.0
|
O
|
E:HOH683
|
2.1
|
16.0
|
1.0
|
O
|
E:SER40
|
2.1
|
13.9
|
1.0
|
O
|
E:HOH695
|
2.1
|
11.2
|
1.0
|
OG
|
E:SER40
|
2.1
|
16.8
|
1.0
|
O10
|
E:5TX503
|
2.3
|
11.4
|
1.0
|
C
|
E:SER40
|
3.0
|
16.6
|
1.0
|
C04
|
E:5TX503
|
3.0
|
13.2
|
1.0
|
CB
|
E:SER40
|
3.1
|
19.2
|
1.0
|
P05
|
E:5TX503
|
3.1
|
11.5
|
1.0
|
CA
|
E:SER40
|
3.4
|
12.7
|
1.0
|
C03
|
E:5TX503
|
3.4
|
13.9
|
1.0
|
C09
|
E:5TX503
|
3.7
|
16.7
|
1.0
|
N
|
E:SER40
|
3.7
|
16.2
|
1.0
|
O07
|
E:5TX503
|
3.8
|
11.4
|
1.0
|
OD1
|
E:ASP319
|
4.1
|
15.2
|
1.0
|
OD1
|
E:ASP318
|
4.1
|
11.0
|
1.0
|
N
|
E:THR41
|
4.2
|
19.2
|
1.0
|
N12
|
E:5TX503
|
4.2
|
11.4
|
1.0
|
OD2
|
E:ASP319
|
4.2
|
16.3
|
1.0
|
MG
|
E:MG500
|
4.3
|
14.0
|
1.0
|
OE1
|
E:GLN166
|
4.4
|
14.3
|
1.0
|
NE2
|
E:GLN166
|
4.4
|
10.3
|
1.0
|
O08
|
E:5TX503
|
4.4
|
10.1
|
1.0
|
O
|
E:HOH643
|
4.4
|
6.5
|
1.0
|
NH2
|
E:ARG372
|
4.5
|
9.7
|
1.0
|
NZ
|
E:LYS343
|
4.5
|
10.8
|
1.0
|
CG
|
E:ASP319
|
4.6
|
16.4
|
1.0
|
CA
|
E:THR41
|
4.7
|
13.7
|
1.0
|
O11
|
E:5TX503
|
4.8
|
12.6
|
1.0
|
CD
|
E:GLN166
|
4.8
|
16.6
|
1.0
|
C02
|
E:5TX503
|
4.9
|
13.4
|
1.0
|
|
Reference:
P.G.Leonard,
D.Maxwell,
N.Satani,
Z.Peng,
T.Link,
G.Lee,
A.Bosajou,
D.Sun,
Y.E.Lin,
M.E.Difrancesco,
B.Czako,
Y.A.Wang,
W.Bornmann,
R.A.Dephinho,
F.L.Muller.
SF2312, A Natural Phosphonate Inhibitor of Enolase To Be Published.
Page generated: Sun Sep 29 03:57:24 2024
|