Magnesium in PDB 5ew7: Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+

The structure of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+, PDB code: 5ew7 was solved by D.R.Tomchick, D.W.Dodd, K.T.Gagnon, D.R.Corey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.20 / 1.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.134, 47.659, 59.495, 90.00, 90.00, 90.00
R / Rfree (%)	23.5 / 25.8

The structure of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+ also contains other interesting chemical elements:

Potassium	(K)	4 atoms
Barium	(Ba)	1 atom

The binding sites of Magnesium atom in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+ (pdb code 5ew7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+, PDB code: 5ew7:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:47.0 occ:1.00 OP2 A:C13 2.2 27.5 1.0 H3' A:G12 2.7 26.3 1.0 H5 A:C13 2.8 19.4 1.0 O5' A:G12 3.5 24.3 1.0 P A:C13 3.5 27.3 1.0 O A:HOH217 3.6 34.0 1.0 C5 A:C13 3.6 16.1 1.0 C3' A:G12 3.6 21.9 1.0 H6 A:C13 3.7 19.5 1.0 H8 A:G12 3.7 21.4 1.0 OP2 A:G12 3.9 24.1 1.0 C8 A:G12 3.9 17.8 1.0 O3' A:G12 4.0 23.4 1.0 C6 A:C13 4.1 16.2 1.0 O5' A:C13 4.1 22.2 1.0 P A:G12 4.2 24.3 1.0 N7 A:G12 4.2 17.2 1.0 H2' A:G12 4.3 24.5 1.0 C5' A:G12 4.4 24.2 1.0 N9 A:G12 4.4 18.2 1.0 H5'' A:G12 4.5 29.0 1.0 C4' A:G12 4.5 22.4 1.0 C2' A:G12 4.5 20.4 1.0 H41 A:C13 4.6 20.3 1.0 O A:HOH211 4.6 23.4 1.0 OP1 A:G12 4.6 25.5 1.0 O A:HOH238 4.7 33.8 1.0 OP1 A:C13 4.7 28.7 1.0 C4 A:C13 4.8 16.4 1.0 C5 A:G12 4.9 16.5 1.0 C1' A:G12 4.9 19.2 1.0 O4' A:G12 4.9 20.4 1.0

Magnesium binding site 2 out of 4 in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg103 b:40.0 occ:1.00 O A:HOH210 2.1 26.2 1.0 O A:HOH243 2.1 36.8 1.0 N7 A:G17 3.9 17.2 1.0 O A:HOH233 4.0 27.1 1.0 O B:HOH253 4.1 36.3 1.0 C8 A:G17 4.5 16.7 1.0 N7 A:G18 4.6 17.2 1.0 C5 A:G17 4.6 17.6 1.0 H8 A:G17 4.6 20.1 1.0 H41 A:C19 4.7 24.8 1.0 O B:HOH214 4.7 10.5 1.0 O6 A:G17 4.8 18.3 1.0 C6 A:G17 5.0 18.2 1.0

Magnesium binding site 3 out of 4 in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg104 b:45.9 occ:1.00 O3' A:C2 2.1 48.2 1.0 H5' A:C3 2.5 49.1 1.0 P A:C3 3.2 45.4 1.0 O5' A:C3 3.3 39.5 1.0 C5' A:C3 3.3 40.9 1.0 H6 A:C3 3.6 50.3 1.0 O4' A:C3 3.7 43.1 1.0 H5'' A:C3 4.0 49.1 1.0 C4' A:C3 4.1 41.1 1.0 OP1 A:C3 4.1 45.6 1.0 OP2 A:C3 4.4 42.2 1.0 C6 A:C3 4.4 41.9 1.0 H4' A:C3 4.5 49.4 1.0 C1' A:C3 4.9 43.2 1.0

Magnesium binding site 4 out of 4 in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with BA2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg105 b:49.6 occ:1.00 OP1 B:C14 2.1 22.8 1.0 O3' B:C13 2.9 17.1 1.0 P B:C14 3.1 22.4 1.0 H5' B:C14 3.7 22.2 1.0 H5'' B:C14 3.7 22.2 1.0 C5' B:C14 4.0 18.5 1.0 O5' B:C14 4.0 18.3 1.0 OP2 B:C14 4.3 22.0 1.0 C3' B:C13 4.3 17.3 1.0 H4' B:C13 4.4 21.8 1.0 H5'' B:C13 4.4 21.9 1.0 C4' B:C13 4.8 18.1 1.0 O2' B:C13 4.8 18.7 1.0 H3' B:C13 4.8 20.7 1.0

D.W.Dodd, D.R.Tomchick, D.R.Corey, K.T.Gagnon. Pathogenic C9ORF72 Antisense Repeat Rna Forms A Double Helix with Tandem C:C Mismatches. Biochemistry V. 55 1283 2016.
ISSN: ISSN 0006-2960
PubMed: 26878348
DOI: 10.1021/ACS.BIOCHEM.6B00136