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Magnesium in PDB 5ewu: Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A

Enzymatic activity of Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A

All present enzymatic activity of Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A:
6.6.1.1;

Protein crystallography data

The structure of Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A, PDB code: 5ewu was solved by Z.Chen, X.Zhang, Y.Liu, L.Jiang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 69.099, 72.776, 72.911, 90.00, 109.76, 90.00
R / Rfree (%) 16.9 / 18.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A (pdb code 5ewu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A, PDB code: 5ewu:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 5ewu

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Magnesium binding site 1 out of 5 in the Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1402

b:23.5
occ:1.00
 O A:HOH1868 2.4 27.5 1.0
O A:HOH1603 3.0 23.7 1.0
N A:GLY1088 3.1 9.2 1.0
O A:HOH1982 3.1 13.7 1.0
N A:SER1151 3.1 8.4 1.0
O A:HOH1506 3.7 56.8 1.0
CA A:SER1151 3.8 8.3 1.0
CB A:SER1087 3.9 8.4 1.0
CA A:GLY1088 3.9 9.6 1.0
CA A:SER1087 3.9 7.9 1.0
CA A:TYR1150 4.0 8.2 1.0
C A:SER1087 4.0 8.4 1.0
C A:TYR1150 4.0 8.4 1.0
OD1 A:ASN1145 4.0 9.1 1.0
O A:HOH2081 4.1 40.2 1.0
NZ A:LYS1177 4.2 9.5 1.0
CB A:TYR1150 4.2 8.5 1.0
O A:HOH1531 4.6 9.8 1.0
CD1 A:TYR1150 4.6 8.6 1.0
CB A:SER1151 4.7 8.9 1.0
C2 A:BEZ1401 4.7 14.8 1.0
OG A:SER1087 4.8 9.2 1.0
N A:VAL1089 4.8 10.1 1.0
C3 A:BEZ1401 4.8 15.8 1.0
CZ3 A:TRP1033 4.8 9.1 1.0
C A:GLY1088 4.9 9.7 1.0
CG A:TYR1150 5.0 8.7 1.0

Magnesium binding site 2 out of 5 in 5ewu

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Magnesium binding site 2 out of 5 in the Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1403

b:11.9
occ:1.00
 OG1 A:THR1040 3.0 13.7 1.0
OG A:SER1044 3.0 9.7 1.0
N A:SER1044 3.2 8.8 1.0
O A:HOH1906 3.4 28.4 1.0
CB A:SER1044 3.5 8.7 1.0
CB A:ASP1036 3.5 13.8 1.0
O A:ASP1036 3.6 12.2 1.0
C A:ASP1036 3.7 12.1 1.0
OD1 A:ASN1037 3.8 11.0 1.0
N A:ASN1037 3.8 11.2 1.0
CG2 A:THR1040 3.8 15.1 1.0
CG A:ASN1037 3.9 9.2 1.0
CB A:THR1040 3.9 13.8 1.0
CA A:ASN1037 4.0 10.9 1.0
CA A:SER1044 4.0 8.3 1.0
ND2 A:ASN1037 4.0 8.9 1.0
CB A:GLU1043 4.0 10.9 1.0
N A:GLU1043 4.1 9.7 1.0
C A:GLU1043 4.2 9.3 1.0
CA A:ASP1036 4.3 12.8 1.0
O A:HOH1730 4.3 9.9 1.0
CA A:GLU1043 4.3 9.8 1.0
CG A:ASP1036 4.6 16.0 1.0
CB A:ASN1037 4.6 10.8 1.0
OD2 A:ASP1036 4.6 18.2 1.0
C A:GLY1042 4.9 9.8 1.0
O A:HOH1712 4.9 52.0 1.0

Magnesium binding site 3 out of 5 in 5ewu

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Magnesium binding site 3 out of 5 in the Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1402

b:24.2
occ:1.00
 O B:HOH1805 2.4 29.0 1.0
O B:HOH1563 3.0 20.1 1.0
O B:HOH1920 3.1 15.2 1.0
N B:GLY1088 3.1 8.8 1.0
N B:SER1151 3.2 9.2 1.0
CB B:SER1087 3.8 8.8 1.0
CA B:SER1087 3.9 8.3 1.0
CA B:SER1151 3.9 9.4 1.0
CA B:TYR1150 3.9 9.5 1.0
CA B:GLY1088 4.0 9.0 1.0
C B:SER1087 4.0 8.4 1.0
C B:TYR1150 4.0 9.3 1.0
OD1 B:ASN1145 4.1 11.9 1.0
CB B:TYR1150 4.1 9.8 1.0
O B:HOH2049 4.2 27.4 1.0
NZ B:LYS1177 4.3 12.3 1.0
CD1 B:TYR1150 4.4 9.8 1.0
C3 B:BEZ1401 4.5 15.5 1.0
C2 B:BEZ1401 4.5 14.2 1.0
N B:VAL1089 4.6 9.6 1.0
O B:HOH1536 4.6 10.8 1.0
OG B:SER1087 4.6 9.5 1.0
CZ3 B:TRP1033 4.7 9.5 1.0
CB B:SER1151 4.7 9.6 1.0
CG B:TYR1150 4.8 9.6 1.0
C B:GLY1088 4.9 9.2 1.0
CG B:ASN1145 5.0 9.7 1.0

Magnesium binding site 4 out of 5 in 5ewu

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Magnesium binding site 4 out of 5 in the Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1403

b:10.8
occ:1.00
 OG B:SER1044 3.0 9.2 1.0
OG1 B:THR1040 3.0 11.3 1.0
O B:HOH1863 3.1 30.8 1.0
N B:SER1044 3.3 8.2 1.0
CB B:SER1044 3.5 8.5 1.0
CB B:ASP1036 3.5 13.2 1.0
O B:ASP1036 3.6 11.0 1.0
C B:ASP1036 3.6 10.9 1.0
N B:ASN1037 3.8 10.3 1.0
CG2 B:THR1040 3.8 14.2 1.0
OD1 B:ASN1037 3.9 10.2 1.0
CG B:ASN1037 3.9 9.2 1.0
CA B:SER1044 4.0 8.3 1.0
CB B:THR1040 4.0 12.2 1.0
CA B:ASN1037 4.0 10.2 1.0
CB B:GLU1043 4.0 10.1 1.0
ND2 B:ASN1037 4.0 9.2 1.0
N B:GLU1043 4.1 9.2 1.0
CA B:ASP1036 4.2 11.8 1.0
C B:GLU1043 4.2 8.6 1.0
CA B:GLU1043 4.3 9.4 1.0
O B:HOH1724 4.3 10.2 1.0
CG B:ASP1036 4.5 14.7 1.0
CB B:ASN1037 4.6 10.0 1.0
OD2 B:ASP1036 4.8 16.6 1.0
C B:GLY1042 4.9 9.4 1.0
OE1 B:GLU1043 5.0 21.0 1.0

Magnesium binding site 5 out of 5 in 5ewu

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Magnesium binding site 5 out of 5 in the Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1404

b:22.4
occ:1.00
 O B:HOH1879 2.8 48.6 1.0
N B:THR1259 3.2 11.8 1.0
NH1 B:ARG1015 3.3 25.1 1.0
CA B:ARG1258 3.6 12.4 1.0
NH2 B:ARG1015 3.8 24.9 1.0
CB B:ARG1258 3.8 13.3 1.0
CB B:GLU1262 3.9 17.0 1.0
C B:ARG1258 3.9 11.8 1.0
OG1 B:THR1259 3.9 14.1 1.0
CG B:GLU1262 4.0 20.0 1.0
CZ B:ARG1015 4.0 24.0 1.0
CG2 B:THR1259 4.1 13.4 1.0
CB B:THR1259 4.3 12.8 1.0
CA B:THR1259 4.3 12.3 1.0
CG B:ARG1258 4.4 15.4 1.0
O B:VAL1257 4.6 14.7 1.0
O B:HOH1628 4.8 30.8 1.0
N B:ARG1258 4.9 12.4 1.0
CD B:GLU1262 4.9 23.2 1.0
CD B:ARG1258 5.0 18.6 1.0

Reference:

Z.Chen, X.Zhang, Y.Liu, L.Jiang. Crystal Structure of the Arabidopsis Thaliana C-Terminal Chlh at 1.25A To Be Published.
Page generated: Tue Aug 12 07:54:06 2025

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