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Magnesium in PDB 5f2t: Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - C 2 Space Group

Protein crystallography data

The structure of Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - C 2 Space Group, PDB code: 5f2t was solved by D.Albesa-Jove, Z.Svetlikova, A.Carreras-Gonzalez, M.Tersa, E.Sancho-Vaello, J.O.Cifuente, K.Mikusova, M.E.Guerin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.60 / 2.06
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 93.600, 71.090, 76.250, 90.00, 91.95, 90.00
R / Rfree (%) 17.3 / 23

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - C 2 Space Group (pdb code 5f2t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - C 2 Space Group, PDB code: 5f2t:

Magnesium binding site 1 out of 1 in 5f2t

Go back to Magnesium Binding Sites List in 5f2t
Magnesium binding site 1 out of 1 in the Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - C 2 Space Group


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - C 2 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:27.6
occ:1.00
OG A:SER257 2.0 24.2 1.0
O A:HOH623 2.0 26.4 1.0
O A:HOH570 2.0 24.2 1.0
OD1 A:ASP255 2.3 21.2 1.0
CB A:SER257 3.1 19.2 1.0
CG A:ASP255 3.2 31.5 1.0
OD2 A:ASP255 3.6 23.5 1.0
N A:SER257 3.9 27.3 1.0
CA A:SER257 4.0 20.9 1.0
O A:HOH675 4.1 42.9 1.0
O A:HOH586 4.3 28.6 1.0
CB A:ASP255 4.5 27.6 1.0
N A:THR256 4.7 19.5 1.0
CA A:ASP255 4.8 24.9 1.0

Reference:

D.Albesa-Jove, Z.Svetlikova, M.Tersa, E.Sancho-Vaello, A.Carreras-Gonzalez, P.Bonnet, P.Arrasate, A.Eguskiza, S.K.Angala, J.O.Cifuente, J.Kordulakova, M.Jackson, K.Mikusova, M.E.Guerin. Structural Basis For Selective Recognition of Acyl Chains By the Membrane-Associated Acyltransferase Pata. Nat Commun V. 7 10906 2016.
ISSN: ESSN 2041-1723
PubMed: 26965057
DOI: 10.1038/NCOMMS10906
Page generated: Tue Aug 12 07:57:38 2025

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