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Magnesium in PDB 5f3r: Structure of Oxidized Udp-Galactopyranose Mutase From Mycobacterium Smegmatis in Complex with Magnesium Ion

Enzymatic activity of Structure of Oxidized Udp-Galactopyranose Mutase From Mycobacterium Smegmatis in Complex with Magnesium Ion

All present enzymatic activity of Structure of Oxidized Udp-Galactopyranose Mutase From Mycobacterium Smegmatis in Complex with Magnesium Ion:
5.4.99.9;

Protein crystallography data

The structure of Structure of Oxidized Udp-Galactopyranose Mutase From Mycobacterium Smegmatis in Complex with Magnesium Ion, PDB code: 5f3r was solved by K.Wangkanont, L.L.Kiessling, K.T.Forest, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.70 / 2.04
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 85.989, 85.989, 126.151, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 24

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Oxidized Udp-Galactopyranose Mutase From Mycobacterium Smegmatis in Complex with Magnesium Ion (pdb code 5f3r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Oxidized Udp-Galactopyranose Mutase From Mycobacterium Smegmatis in Complex with Magnesium Ion, PDB code: 5f3r:

Magnesium binding site 1 out of 1 in 5f3r

Go back to Magnesium Binding Sites List in 5f3r
Magnesium binding site 1 out of 1 in the Structure of Oxidized Udp-Galactopyranose Mutase From Mycobacterium Smegmatis in Complex with Magnesium Ion


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Oxidized Udp-Galactopyranose Mutase From Mycobacterium Smegmatis in Complex with Magnesium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:34.9
occ:0.50
 OD1 A:ASP330 2.1 35.8 1.0
O A:HOH727 2.1 37.4 1.0
O A:HOH618 2.1 30.6 1.0
CG A:ASP330 3.0 38.4 1.0
OD2 A:ASP330 3.3 38.6 1.0
O A:PHE328 4.1 37.9 1.0
O A:HOH774 4.3 56.1 1.0
CB A:ASP330 4.4 36.0 1.0
NH2 A:ARG327 4.5 39.4 1.0
N A:ASP330 4.7 36.4 1.0
CA A:ASP330 4.8 38.3 1.0
C A:PHE328 4.9 34.7 1.0

Reference:

K.Wangkanont, L.L.Kiessling, K.T.Forest. Structural Dynamics of Udp-Galactopyranose Mutase From Mycobacterium Smegmatis To Be Published.
Page generated: Tue Aug 12 07:57:46 2025

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