Magnesium in PDB 5f9z: Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp

The structure of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp, PDB code: 5f9z was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.61 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	89.400, 108.720, 126.350, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 23.4

The structure of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Bromine	(Br)	2 atoms
Zinc	(Zn)	2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp (pdb code 5f9z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp, PDB code: 5f9z:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg700 b:30.1 occ:1.00 O3G A:ANP701 2.0 33.6 1.0 O A:HOH804 2.1 30.8 1.0 O A:HOH897 2.1 27.7 1.0 O A:HOH894 2.2 29.5 1.0 O2B A:ANP701 2.2 29.2 1.0 O A:HOH833 2.2 31.3 1.0 PG A:ANP701 3.4 36.0 1.0 PB A:ANP701 3.6 33.3 1.0 O1G A:ANP701 3.7 36.8 1.0 NH1 A:ARG331 3.8 28.7 1.0 OE2 A:GLU279 4.0 40.1 1.0 OE1 A:GLU279 4.1 37.8 1.0 N3B A:ANP701 4.1 34.6 1.0 OE2 A:GLU333 4.2 29.0 1.0 N1 A:HFG702 4.2 35.6 1.0 NH1 A:ARG342 4.2 36.2 1.0 OE1 A:GLU333 4.3 31.5 1.0 O1B A:ANP701 4.4 34.3 1.0 N7 A:ANP701 4.5 30.0 1.0 CD A:GLU279 4.5 39.0 1.0 C2 A:HFG702 4.6 34.5 1.0 O2G A:ANP701 4.6 37.5 1.0 O3A A:ANP701 4.6 33.7 1.0 CD A:GLU333 4.7 30.1 1.0 CD A:ARG331 4.8 29.6 1.0 CZ A:ARG331 4.9 30.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg701 b:26.7 occ:1.00 O1G B:ANP702 2.0 27.8 1.0 O B:HOH822 2.0 26.1 1.0 O B:HOH834 2.1 25.5 1.0 O B:HOH841 2.1 25.9 1.0 O B:HOH802 2.2 26.6 1.0 O1B B:ANP702 2.2 27.6 1.0 PG B:ANP702 3.5 31.0 1.0 PB B:ANP702 3.6 28.8 1.0 O B:HOH973 3.9 41.2 1.0 OE2 B:GLU279 3.9 42.6 1.0 NH1 B:ARG331 3.9 27.7 1.0 OE2 B:GLU333 4.0 31.4 1.0 NH1 B:ARG342 4.1 35.4 1.0 OE1 B:GLU279 4.1 36.9 1.0 OE1 B:GLU333 4.1 33.6 1.0 O3G B:ANP702 4.1 34.6 1.0 N3B B:ANP702 4.1 30.2 1.0 N1 B:HFG703 4.2 28.6 1.0 O2B B:ANP702 4.3 29.6 1.0 CD B:GLU279 4.4 38.8 1.0 N7 B:ANP702 4.4 23.9 1.0 CD B:GLU333 4.5 32.5 1.0 O2G B:ANP702 4.5 30.4 1.0 O3A B:ANP702 4.7 30.0 1.0 C2 B:HFG703 4.7 27.4 1.0 CD B:ARG331 4.7 24.5 1.0 CZ B:ARG331 4.9 27.0 1.0

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), D.M.Dranow, D.Fox Iii, D.Lorimer, T.E.Edwards. Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp To Be Published.