Magnesium in PDB 5fa8: Sam Complex with Akmt From the Hyperthermophilic Archaeon Sulfolobus Islandicu

The structure of Sam Complex with Akmt From the Hyperthermophilic Archaeon Sulfolobus Islandicu, PDB code: 5fa8 was solved by S.Ouyang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.60 / 1.30
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	48.301, 57.993, 55.725, 90.00, 100.93, 90.00
R / Rfree (%)	18.3 / 21.2

The binding sites of Magnesium atom in the Sam Complex with Akmt From the Hyperthermophilic Archaeon Sulfolobus Islandicu (pdb code 5fa8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Sam Complex with Akmt From the Hyperthermophilic Archaeon Sulfolobus Islandicu, PDB code: 5fa8:

Magnesium binding site 1 out of 1 in the Sam Complex with Akmt From the Hyperthermophilic Archaeon Sulfolobus Islandicu


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sam Complex with Akmt From the Hyperthermophilic Archaeon Sulfolobus Islandicu within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:8.7 occ:1.00 OE1 A:GLU129 2.0 22.1 1.0 ND1 A:HIS150 2.1 17.1 1.0 OE2 A:GLU129 2.1 21.4 1.0 NE2 A:HIS128 2.1 17.4 1.0 O A:HOH450 2.2 17.0 1.0 CD A:GLU129 2.4 21.9 1.0 CE1 A:HIS128 3.1 18.5 1.0 CE1 A:HIS150 3.1 17.6 1.0 CG A:HIS150 3.1 17.4 1.0 CD2 A:HIS128 3.1 17.4 1.0 CB A:HIS150 3.4 18.1 1.0 CA A:HIS150 3.9 18.5 1.0 CG A:GLU129 3.9 21.6 1.0 O A:ASN149 4.1 22.1 1.0 ND1 A:HIS128 4.2 18.1 1.0 NE2 A:HIS150 4.2 17.4 1.0 CD2 A:HIS150 4.2 18.5 1.0 CG A:HIS128 4.3 18.0 1.0 O A:HOH506 4.7 30.5 1.0 CB A:GLU129 4.7 20.7 1.0 N A:HIS150 4.8 19.2 1.0 N A:THR151 4.8 18.0 1.0 CZ A:PHE102 4.9 18.6 1.0 C A:ASN149 4.9 21.6 1.0 C A:HIS150 5.0 18.5 1.0 CE1 A:PHE102 5.0 18.5 1.0

Y.Chu, Y.Zhu, Y.Chen, W.Li, Z.Zhang, D.Liu, T.Wang, J.Ma, H.Deng, Z.J.Liu, S.Ouyang, L.Huang. Akmt Catalyzes Extensive Protein Lysine Methylation in the Hyperthermophilic Archaeon Sulfolobus Islandicus But Is Dispensable For the Growth of the Organism Mol.Cell Proteomics V. 15 2908 2016.
ISSN: ESSN 1535-9484
PubMed: 27329856
DOI: 10.1074/MCP.M115.057778