Magnesium in PDB 5fbs: Crystal Structure of Rifampin Phosphotransferase Rph-Lm From Listeria Monocytogenes in Complex with Adp and Magnesium

The structure of Crystal Structure of Rifampin Phosphotransferase Rph-Lm From Listeria Monocytogenes in Complex with Adp and Magnesium, PDB code: 5fbs was solved by P.J.Stogios, Z.Wawrzak, T.Skarina, V.Yim, A.Savchenko, W.F.Anderson, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.54 / 2.59
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	58.510, 58.510, 601.860, 90.00, 90.00, 90.00
R / Rfree (%)	26 / 31.8

The binding sites of Magnesium atom in the Crystal Structure of Rifampin Phosphotransferase Rph-Lm From Listeria Monocytogenes in Complex with Adp and Magnesium (pdb code 5fbs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Rifampin Phosphotransferase Rph-Lm From Listeria Monocytogenes in Complex with Adp and Magnesium, PDB code: 5fbs:

Magnesium binding site 1 out of 1 in the Crystal Structure of Rifampin Phosphotransferase Rph-Lm From Listeria Monocytogenes in Complex with Adp and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Rifampin Phosphotransferase Rph-Lm From Listeria Monocytogenes in Complex with Adp and Magnesium within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:36.7 occ:1.00 OE2 A:GLU297 2.1 62.0 1.0 OE1 A:GLN309 2.1 53.1 1.0 O3A A:ADP902 2.3 0.9 1.0 CD A:GLU297 2.8 61.2 1.0 OE1 A:GLU297 2.9 68.9 1.0 O1B A:ADP902 2.9 85.6 1.0 CD A:GLN309 3.1 47.2 1.0 PB A:ADP902 3.2 81.6 1.0 O5' A:ADP902 3.5 62.5 1.0 PA A:ADP902 3.5 60.0 1.0 NE2 A:GLN309 3.6 49.7 1.0 O2B A:ADP902 3.9 79.6 1.0 NH2 A:ARG117 4.2 34.1 1.0 O1A A:ADP902 4.2 60.8 1.0 CG A:GLU297 4.3 52.5 1.0 O3B A:ADP902 4.4 80.4 1.0 CG A:GLN309 4.4 43.0 1.0 C5' A:ADP902 4.5 58.4 1.0 O2A A:ADP902 4.6 68.5 1.0 CB A:GLN309 4.6 43.6 1.0 C3' A:ADP902 4.6 59.6 1.0 O3' A:ADP902 4.9 64.3 1.0

P.J.Stogios, G.Cox, P.Spanogiannopoulos, M.C.Pillon, N.Waglechner, T.Skarina, K.Koteva, A.Guarne, A.Savchenko, G.D.Wright. Rifampin Phosphotransferase Is An Unusual Antibiotic Resistance Kinase. Nat Commun V. 7 11343 2016.
ISSN: ESSN 2041-1723
PubMed: 27103605
DOI: 10.1038/NCOMMS11343