Magnesium in PDB 5fj0: Structure of the Standard Kink Turn Hmkt-7 As Simple Duplex in P4222 Space Group

The structure of Structure of the Standard Kink Turn Hmkt-7 As Simple Duplex in P4222 Space Group, PDB code: 5fj0 was solved by L.Huang, D.M.J.Lilley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.69 / 2.20
Space group	P 42 2 2
Cell size a, b, c (Å), α, β, γ (°)	50.504, 50.504, 144.953, 90.00, 90.00, 90.00
R / Rfree (%)	20.3 / 23.7

The binding sites of Magnesium atom in the Structure of the Standard Kink Turn Hmkt-7 As Simple Duplex in P4222 Space Group (pdb code 5fj0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of the Standard Kink Turn Hmkt-7 As Simple Duplex in P4222 Space Group, PDB code: 5fj0:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of the Standard Kink Turn Hmkt-7 As Simple Duplex in P4222 Space Group


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Standard Kink Turn Hmkt-7 As Simple Duplex in P4222 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1020 b:98.3 occ:1.00 OP2 B:G15 2.6 85.1 1.0 N7 C:G15 2.8 87.8 1.0 C8 C:G15 3.7 0.5 1.0 C8 B:G15 3.7 87.1 1.0 OP2 C:G14 3.7 74.4 1.0 N7 B:G15 3.7 77.7 1.0 P B:G15 3.9 95.0 1.0 C5 C:G15 4.0 97.2 1.0 O6 C:G15 4.2 93.8 1.0 OP2 C:G15 4.3 93.7 1.0 O5' B:G15 4.3 86.5 1.0 C6 C:G15 4.5 91.5 1.0 OP1 B:G15 4.7 93.7 1.0 P C:G14 4.7 83.4 1.0 OP2 B:G14 4.9 94.3 1.0 O5' C:G14 4.9 80.9 1.0 N9 C:G15 4.9 93.4 1.0 N9 B:G15 5.0 81.9 1.0

Magnesium binding site 2 out of 3 in the Structure of the Standard Kink Turn Hmkt-7 As Simple Duplex in P4222 Space Group


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Standard Kink Turn Hmkt-7 As Simple Duplex in P4222 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1021 b:0.5 occ:1.00 N7 B:G1 3.1 93.2 1.0 O6 B:G1 3.3 87.2 1.0 C5 B:G1 3.8 96.2 1.0 C6 B:G1 3.9 96.5 1.0 C8 B:G1 4.2 95.8 1.0

Magnesium binding site 3 out of 3 in the Structure of the Standard Kink Turn Hmkt-7 As Simple Duplex in P4222 Space Group


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Standard Kink Turn Hmkt-7 As Simple Duplex in P4222 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1020 b:69.3 occ:0.64 O6 C:G14 2.5 75.4 1.0 N7 C:G13 2.9 66.1 1.0 C6 C:G14 3.3 81.3 1.0 C8 C:G13 3.6 73.4 1.0 C5 C:G14 3.8 74.6 1.0 N7 C:G14 3.9 71.4 1.0 C5 C:G13 4.0 69.1 1.0 N7 C:G12 4.2 80.4 1.0 N1 C:G14 4.2 84.1 1.0 O6 C:G13 4.3 76.4 1.0 OP2 C:G13 4.5 91.4 1.0 C6 C:G13 4.5 67.4 1.0 C5 C:G12 4.7 68.8 1.0 C8 C:G12 4.7 70.0 1.0 N9 C:G13 4.9 83.1 1.0 O6 C:G15 5.0 93.8 1.0

L.Huang, J.Wang, D.M.J.Lilley. A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res. V. 44 5390 2016.
ISSN: ISSN 0305-1048
PubMed: 27016741
DOI: 10.1093/NAR/GKW201