Magnesium in PDB 5flm: Structure of Transcribing Mammalian Rna Polymerase II

All present enzymatic activity of Structure of Transcribing Mammalian Rna Polymerase II:
2.7.7.6;

The structure of Structure of Transcribing Mammalian Rna Polymerase II also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

The binding sites of Magnesium atom in the Structure of Transcribing Mammalian Rna Polymerase II (pdb code 5flm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Transcribing Mammalian Rna Polymerase II, PDB code: 5flm:

Magnesium binding site 1 out of 1 in the Structure of Transcribing Mammalian Rna Polymerase II


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Transcribing Mammalian Rna Polymerase II within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2490 b:0.1 occ:1.00 O3' P:C20 2.1 0.1 1.0 OD2 A:ASP499 2.2 0.8 1.0 OD1 A:ASP495 2.3 1.0 1.0 OD1 A:ASP499 2.3 0.8 1.0 CG A:ASP499 2.5 0.8 1.0 O2' P:C20 3.3 0.1 1.0 C3' P:C20 3.4 0.1 1.0 OD1 A:ASP497 3.4 0.4 1.0 CG A:ASP495 3.4 1.0 1.0 O A:ASP495 3.9 0.1 1.0 C2' P:C20 3.9 0.1 1.0 OD2 A:ASP495 3.9 1.0 1.0 C4' P:C20 4.0 0.1 1.0 CB A:ASP499 4.0 0.8 1.0 NH2 A:ARG460 4.1 0.9 1.0 O A:ASP497 4.1 0.7 1.0 N A:ASP495 4.2 0.1 1.0 CG A:ASP497 4.5 0.4 1.0 C A:ASP495 4.5 0.1 1.0 CB A:ASP495 4.7 1.0 1.0 CA A:ASP495 4.7 0.1 1.0 C5' P:C20 4.8 0.1 1.0 CA A:ASP499 4.9 0.9 1.0 N A:ASP497 5.0 0.7 1.0

C.Bernecky, F.Herzog, W.Baumeister, J.M.Plitzko, P.Cramer. Structure of Transcribing Mammalian Rna Polymerase II Nature V. 529 551 2016.
ISSN: ISSN 0028-0836
PubMed: 26789250
DOI: 10.1038/NATURE16482