Atomistry » Magnesium » PDB 5fhd-5fro » 5fm0
Atomistry »
  Magnesium »
    PDB 5fhd-5fro »
      5fm0 »

Magnesium in PDB 5fm0: Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative)

Enzymatic activity of Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative)

All present enzymatic activity of Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative):
6.2.1.14;

Protein crystallography data

The structure of Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative), PDB code: 5fm0 was solved by L.Moynie, M.Wang, D.J.Campopiano, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 83.35 / 2.44
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.610, 78.360, 166.700, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24.2

Other elements in 5fm0:

The structure of Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative) also contains other interesting chemical elements:

Platinum (Pt) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative) (pdb code 5fm0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative), PDB code: 5fm0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5fm0

Go back to Magnesium Binding Sites List in 5fm0
Magnesium binding site 1 out of 2 in the Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1258

b:61.9
occ:1.00
O12 A:PPV1257 2.1 63.8 1.0
O A:HOH2006 2.3 49.9 1.0
O A:HOH2005 2.3 60.6 1.0
O21 A:PPV1257 2.4 50.7 1.0
OAH A:WAQ1256 2.4 44.1 1.0
O A:HOH2010 3.4 50.2 1.0
OE1 A:GLU173 3.5 68.0 1.0
P2 A:PPV1257 3.6 59.9 1.0
P1 A:PPV1257 3.7 54.0 1.0
PBG A:WAQ1256 3.8 45.5 1.0
OPP A:PPV1257 4.1 73.8 1.0
NZ A:LYS49 4.1 67.2 1.0
O A:GLY29 4.3 63.5 1.0
OAU A:WAQ1256 4.3 66.3 1.0
O32 A:PPV1257 4.4 81.5 1.0
O31 A:PPV1257 4.4 53.7 1.0
CD A:GLU173 4.6 58.0 1.0
N7 A:WAQ1256 4.6 49.2 1.0
CB A:GLU173 4.6 37.9 1.0
O22 A:PPV1257 4.6 66.8 1.0
C8 A:WAQ1256 4.7 51.1 1.0
O5' A:WAQ1256 4.7 41.9 1.0
NH2 A:ARG145 4.7 47.8 1.0
OE2 A:GLU31 4.9 72.2 1.0
O11 A:PPV1257 5.0 56.0 1.0

Magnesium binding site 2 out of 2 in 5fm0

Go back to Magnesium Binding Sites List in 5fm0
Magnesium binding site 2 out of 2 in the Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the 6-Carboxyhexanoate-Coa Ligase (Biow)From Bacillus Subtilis (PTCL4 Derivative) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1259

b:60.8
occ:1.00
O32 A:PPV1257 2.1 81.5 1.0
OD1 A:ASP195 2.2 57.1 1.0
O A:HOH2004 2.3 49.8 1.0
OAD A:WAQ1256 2.4 51.8 1.0
OD1 A:ASP196 2.4 70.3 1.0
O31 A:PPV1257 2.6 53.7 1.0
OPP A:PPV1257 3.2 73.8 1.0
CG A:ASP195 3.3 51.8 1.0
P2 A:PPV1257 3.3 59.9 1.0
PBG A:WAQ1256 3.3 45.5 1.0
CG A:ASP196 3.3 68.8 1.0
OAH A:WAQ1256 3.5 44.1 1.0
P1 A:PPV1257 3.5 54.0 1.0
OD2 A:ASP196 3.6 69.5 1.0
OD2 A:ASP195 3.6 62.7 1.0
NE2 A:HIS53 3.9 58.1 1.0
CE1 A:HIS53 4.0 64.1 1.0
O5' A:WAQ1256 4.1 41.9 1.0
O12 A:PPV1257 4.1 63.8 1.0
C5' A:WAQ1256 4.1 41.0 1.0
OG A:SER194 4.3 55.6 1.0
N A:ASP196 4.4 44.4 1.0
O22 A:PPV1257 4.4 66.8 1.0
N A:ASP195 4.4 47.9 1.0
O21 A:PPV1257 4.4 50.7 1.0
CB A:ASP195 4.6 53.1 1.0
CD A:ARG55 4.6 57.7 1.0
O11 A:PPV1257 4.6 56.0 1.0
O A:ILE27 4.7 61.9 1.0
CB A:ASP196 4.7 53.7 1.0
C A:ASP195 4.8 43.6 1.0
OAU A:WAQ1256 4.8 66.3 1.0
CA A:ASP195 4.8 47.9 1.0
O3' A:WAQ1256 4.8 47.1 1.0
C3' A:WAQ1256 4.9 48.9 1.0

Reference:

M.Wang, L.Moynie, P.J.Harrison, V.Kelly, A.Piper, J.H.Naismith, D.J.Campopiano. Using the Pimeloyl-Coa Synthetase Adenylation Fold to Synthesize Fatty Acid Thioesters. Nat. Chem. Biol. V. 13 660 2017.
ISSN: ESSN 1552-4469
PubMed: 28414710
DOI: 10.1038/NCHEMBIO.2361
Page generated: Mon Dec 14 20:19:06 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy