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Magnesium in PDB 5fqo: Crystal Structure of M. Musculus Protein Arginine Methyltransferase PRMT6 with Sah and Magnesium

Enzymatic activity of Crystal Structure of M. Musculus Protein Arginine Methyltransferase PRMT6 with Sah and Magnesium

All present enzymatic activity of Crystal Structure of M. Musculus Protein Arginine Methyltransferase PRMT6 with Sah and Magnesium:
2.1.1.125;

Protein crystallography data

The structure of Crystal Structure of M. Musculus Protein Arginine Methyltransferase PRMT6 with Sah and Magnesium, PDB code: 5fqo was solved by L.Bonnefond, J.Cavarelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.702 / 1.90
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 78.620, 78.620, 118.260, 90.00, 90.00, 90.00
R / Rfree (%) 15.81 / 19.83

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of M. Musculus Protein Arginine Methyltransferase PRMT6 with Sah and Magnesium (pdb code 5fqo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of M. Musculus Protein Arginine Methyltransferase PRMT6 with Sah and Magnesium, PDB code: 5fqo:

Magnesium binding site 1 out of 1 in 5fqo

Go back to Magnesium Binding Sites List in 5fqo
Magnesium binding site 1 out of 1 in the Crystal Structure of M. Musculus Protein Arginine Methyltransferase PRMT6 with Sah and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of M. Musculus Protein Arginine Methyltransferase PRMT6 with Sah and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1379

b:26.1
occ:1.00
 O A:HOH2097 2.1 26.1 1.0
O A:HOH2092 2.1 21.5 1.0
O A:HOH2015 2.2 24.1 1.0
O A:MET160 2.3 14.1 1.0
O A:HOH2014 2.3 22.5 1.0
O A:HOH2096 2.5 30.7 1.0
C A:MET160 3.4 15.6 1.0
OE1 A:GLU158 3.7 23.0 1.0
O A:HOH2093 3.9 25.6 1.0
NE1 A:TRP321 3.9 14.0 1.0
CA A:GLY161 4.0 13.5 1.0
OE2 A:GLU158 4.1 23.4 1.0
N A:GLY161 4.2 14.1 1.0
CD A:GLU158 4.3 20.8 1.0
N A:MET160 4.4 14.3 1.0
CA A:MET160 4.5 14.4 1.0
CE2 A:TRP321 4.6 11.0 1.0
CZ2 A:TRP321 4.6 12.7 1.0
C A:TRP159 4.6 16.0 1.0
NE2 A:HIS320 4.6 18.3 1.0
O A:HOH2098 4.6 21.6 1.0
O A:TRP159 4.6 13.8 1.0
SD A:SAH1378 4.7 21.9 1.0
SD A:MET63 4.9 28.3 1.0
CD1 A:TRP321 4.9 15.5 1.0
O A:GLU158 5.0 15.9 1.0

Reference:

L.Bonnefond, V.Cura, N.Troffer-Charlier, J.Cavarelli. Crystal Strcutures of PRMT6 in Complex with Sah in Alternative Conformations To Be Published.
Page generated: Mon Dec 14 20:19:29 2020

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