Magnesium in PDB 5fsb: Structure of Tectonin 2 From Laccaria Bicolor in Complex with 2-O- Methyl-Methyl-Seleno-Beta-L-Fucopyranoside

The structure of Structure of Tectonin 2 From Laccaria Bicolor in Complex with 2-O- Methyl-Methyl-Seleno-Beta-L-Fucopyranoside, PDB code: 5fsb was solved by R.Sommer, S.Bleuer, A.Titz, M.Kunzler, A.Varrot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.53 / 1.65
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	69.058, 69.058, 349.211, 90.00, 90.00, 120.00
R / Rfree (%)	13.3 / 16.7

The binding sites of Magnesium atom in the Structure of Tectonin 2 From Laccaria Bicolor in Complex with 2-O- Methyl-Methyl-Seleno-Beta-L-Fucopyranoside (pdb code 5fsb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Tectonin 2 From Laccaria Bicolor in Complex with 2-O- Methyl-Methyl-Seleno-Beta-L-Fucopyranoside, PDB code: 5fsb:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Tectonin 2 From Laccaria Bicolor in Complex with 2-O- Methyl-Methyl-Seleno-Beta-L-Fucopyranoside


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Tectonin 2 From Laccaria Bicolor in Complex with 2-O- Methyl-Methyl-Seleno-Beta-L-Fucopyranoside within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg299 b:3.0 occ:1.00 O A:HOH2199 2.1 3.7 1.0 O A:HOH2036 2.1 4.9 1.0 O A:HOH2039 2.1 3.5 1.0 O A:HOH2037 2.1 4.1 1.0 O A:HOH2031 2.1 4.9 1.0 O A:HOH2107 2.2 3.9 1.0 O A:HOH2166 3.9 6.1 1.0 NH2 A:ARG12 4.0 9.0 0.5 OD1 A:ASP203 4.1 4.5 1.0 OD1 A:ASP125 4.1 4.6 1.0 NH2 A:ARG87 4.1 6.1 0.5 OD1 A:ASP50 4.2 4.1 1.0 OD2 A:ASP203 4.2 4.9 1.0 OD2 A:ASP125 4.2 4.6 1.0 OD2 A:ASP50 4.3 4.0 1.0 O A:ILE13 4.3 3.9 1.0 O A:ILE88 4.3 4.0 1.0 O A:ILE126 4.3 4.1 1.0 O A:ILE166 4.4 3.9 1.0 O A:ILE51 4.5 4.1 1.0 O A:ILE204 4.5 3.9 1.0 CG A:ASP203 4.6 4.2 1.0 CG A:ASP125 4.6 4.9 1.0 CG A:ASP50 4.7 3.9 1.0 NE A:ARG12 4.9 8.4 0.5 CZ A:ARG12 4.9 9.1 0.5

Magnesium binding site 2 out of 2 in the Structure of Tectonin 2 From Laccaria Bicolor in Complex with 2-O- Methyl-Methyl-Seleno-Beta-L-Fucopyranoside


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Tectonin 2 From Laccaria Bicolor in Complex with 2-O- Methyl-Methyl-Seleno-Beta-L-Fucopyranoside within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg299 b:5.7 occ:0.33 O B:HOH2123 2.1 4.6 0.3 O B:HOH2048 2.1 7.0 0.3 O B:HOH2086 2.1 4.6 0.3 O B:HOH2049 2.2 4.5 0.3 O B:HOH2147 2.2 4.5 0.3 O B:HOH2087 2.2 4.5 0.3 NH2 B:ARG87 3.9 11.1 0.3 OD1 B:ASP203 4.1 5.8 0.3 OD1 B:ASP50 4.1 5.8 0.3 OD1 B:ASP125 4.1 5.7 0.3 OD2 B:ASP125 4.2 5.5 0.3 OD2 B:ASP50 4.2 5.5 0.3 OD2 B:ASP203 4.2 5.5 0.3 O B:ILE13 4.3 6.2 0.3 O B:ILE166 4.3 5.4 0.3 O B:ILE88 4.4 6.2 0.3 O B:ILE126 4.5 5.4 0.3 O B:ILE204 4.5 5.4 0.3 O B:ILE51 4.6 5.3 0.3 CG B:ASP125 4.6 5.5 0.3 CG B:ASP203 4.6 5.5 0.3 CG B:ASP50 4.6 5.5 0.3 CZ B:ARG87 4.9 10.9 0.3

R.Sommer, O.N.Makshakova, T.Wohlschlager, S.Hutin, M.Marsh, A.Titz, M.Kunzler, A.Varrot. Crystal Structures of Fungal Tectonin in Complex with O-Methylated Glycans Suggest Key Role in Innate Immune Defense. Structure V. 26 391 2018.
ISSN: ISSN 1878-4186
PubMed: 29398527
DOI: 10.1016/J.STR.2018.01.003