Magnesium in PDB 5fuk: Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula

Enzymatic activity of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula

All present enzymatic activity of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula:
1.11.2.1;

Protein crystallography data

The structure of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula, PDB code: 5fuk was solved by K.Piontek, E.Strittmatter, D.A.Plattner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.36 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.010, 76.670, 120.800, 90.00, 90.00, 90.00
R / Rfree (%) 15.485 / 18.297

Other elements in 5fuk:

The structure of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula (pdb code 5fuk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula, PDB code: 5fuk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5fuk

Go back to Magnesium Binding Sites List in 5fuk
Magnesium binding site 1 out of 2 in the Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1239

b:15.0
occ:1.00
O A:HOH2164 2.1 16.0 1.0
OG A:SER89 2.1 15.2 1.0
O A:HOH2163 2.1 15.6 1.0
O1D A:HEM1235 2.1 14.1 1.0
OE2 A:GLU85 2.1 15.7 1.0
O A:HIS86 2.2 16.2 1.0
CGD A:HEM1235 3.1 14.6 1.0
CD A:GLU85 3.2 18.8 1.0
C A:HIS86 3.3 15.1 1.0
CB A:SER89 3.3 15.5 1.0
O2D A:HEM1235 3.4 16.4 1.0
N A:HIS86 3.6 14.9 1.0
CG A:GLU85 3.6 16.9 1.0
O A:HOH2155 4.0 17.6 1.0
CA A:HIS86 4.1 15.5 1.0
O A:HOH2036 4.1 16.4 1.0
OE1 A:GLU85 4.2 16.1 1.0
ND1 A:HIS86 4.3 15.8 1.0
N A:ASP87 4.4 15.7 1.0
O A:HOH2169 4.4 17.4 1.0
CA A:SER89 4.4 14.1 1.0
CBD A:HEM1235 4.5 13.6 1.0
N A:SER89 4.5 14.0 1.0
CB A:ARG92 4.5 15.3 1.0
C A:GLU85 4.6 16.4 1.0
O A:ASN100 4.6 17.1 1.0
CE1 A:HIS86 4.6 15.6 1.0
CA A:ASP87 4.6 15.1 1.0
CG A:HIS86 4.6 15.8 1.0
O A:GLU93 4.7 16.7 1.0
CB A:GLU85 4.8 14.9 1.0
CA A:GLU85 4.8 15.0 1.0
CB A:ASN100 4.8 17.1 1.0
C A:ASP87 4.9 15.3 1.0
CB A:HIS86 5.0 15.6 1.0
CAD A:HEM1235 5.0 13.5 1.0

Magnesium binding site 2 out of 2 in 5fuk

Go back to Magnesium Binding Sites List in 5fuk
Magnesium binding site 2 out of 2 in the Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1239

b:15.1
occ:1.00
OE2 B:GLU85 2.1 16.2 1.0
O B:HOH2137 2.1 15.3 1.0
O B:HOH2138 2.1 14.5 1.0
OG B:SER89 2.1 14.8 1.0
O B:HIS86 2.1 15.5 1.0
O1D B:HEM1235 2.2 14.5 1.0
CD B:GLU85 3.1 15.7 1.0
CGD B:HEM1235 3.2 14.8 1.0
C B:HIS86 3.2 15.6 1.0
CB B:SER89 3.4 14.7 1.0
O2D B:HEM1235 3.4 14.7 1.0
N B:HIS86 3.6 14.8 1.0
CG B:GLU85 3.7 15.3 1.0
CA B:HIS86 4.0 14.8 1.0
O B:HOH2130 4.0 17.6 1.0
O B:HOH2033 4.1 14.8 1.0
OE1 B:GLU85 4.2 17.1 1.0
ND1 B:HIS86 4.3 16.5 1.0
N B:ASP87 4.3 14.7 1.0
O B:HOH2143 4.4 16.0 1.0
CA B:SER89 4.4 13.8 1.0
CBD B:HEM1235 4.5 14.1 1.0
N B:SER89 4.5 14.4 1.0
C B:GLU85 4.5 16.0 1.0
CB B:ARG92 4.5 14.6 1.0
O B:ASN100 4.6 18.2 1.0
CE1 B:HIS86 4.6 15.9 1.0
O B:GLU93 4.6 17.6 1.0
CG B:HIS86 4.6 15.2 1.0
CA B:ASP87 4.7 16.2 1.0
CB B:ASN100 4.8 17.5 1.0
CA B:GLU85 4.8 15.4 1.0
CB B:GLU85 4.8 14.6 1.0
C B:ASP87 4.9 17.3 1.0
CB B:HIS86 5.0 15.4 1.0

Reference:

K.Piontek, E.Strittmatter, D.A.Plattner. Dimeric Heme Peroxygenase From Marasmius Rotula To Be Published.
Page generated: Mon Dec 14 20:19:47 2020

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