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Magnesium in PDB 5fwp: Atomic Cryoem Structure of HSP90-CDC37-CDK4 Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Atomic Cryoem Structure of HSP90-CDC37-CDK4 Complex (pdb code 5fwp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Atomic Cryoem Structure of HSP90-CDC37-CDK4 Complex, PDB code: 5fwp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5fwp

Go back to Magnesium Binding Sites List in 5fwp
Magnesium binding site 1 out of 2 in the Atomic Cryoem Structure of HSP90-CDC37-CDK4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atomic Cryoem Structure of HSP90-CDC37-CDK4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1692

b:0.4
occ:1.00
OD1 A:ASN46 1.4 0.4 1.0
O2B A:ATP1691 2.0 0.4 1.0
O2A A:ATP1691 2.1 0.4 1.0
CG A:ASN46 2.4 0.4 1.0
O2G A:ATP1691 2.6 0.4 1.0
HD22 A:ASN46 2.9 0.4 1.0
ND2 A:ASN46 3.0 0.4 1.0
PA A:ATP1691 3.3 0.4 1.0
PB A:ATP1691 3.4 0.4 1.0
HA A:ASN46 3.5 0.4 1.0
O5' A:ATP1691 3.7 0.4 1.0
CB A:ASN46 3.7 0.4 1.0
O A:GLU42 3.8 0.4 1.0
HB2 A:SER45 3.9 0.4 1.0
PG A:ATP1691 3.9 0.4 1.0
H A:ASN46 3.9 0.4 1.0
CA A:ASN46 3.9 0.4 1.0
O3A A:ATP1691 3.9 0.4 1.0
N A:ASN46 3.9 0.4 1.0
HD21 A:ASN46 3.9 0.4 1.0
O3B A:ATP1691 4.0 0.4 1.0
OE1 A:GLU42 4.1 0.4 1.0
OD2 A:ASP49 4.2 0.4 1.0
HB3 A:SER45 4.3 0.4 1.0
HB3 A:ASN46 4.3 0.4 1.0
HB2 A:ASN46 4.4 0.4 1.0
HB3 A:GLU42 4.4 0.4 1.0
C A:SER45 4.6 0.4 1.0
O1A A:ATP1691 4.6 0.4 1.0
CB A:SER45 4.6 0.4 1.0
O1B A:ATP1691 4.6 0.4 1.0
HA A:GLU42 4.6 0.4 1.0
O1G A:ATP1691 4.7 0.4 1.0
C5' A:ATP1691 4.7 0.4 1.0
O A:ILE126 4.7 0.4 1.0
HA3 A:GLY132 4.8 0.4 1.0
C A:GLU42 4.8 0.4 1.0
O3G A:ATP1691 4.9 0.4 1.0

Magnesium binding site 2 out of 2 in 5fwp

Go back to Magnesium Binding Sites List in 5fwp
Magnesium binding site 2 out of 2 in the Atomic Cryoem Structure of HSP90-CDC37-CDK4 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atomic Cryoem Structure of HSP90-CDC37-CDK4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1693

b:0.4
occ:1.00
OD1 B:ASN46 1.5 0.4 1.0
O2A B:ATP1692 2.0 0.4 1.0
O2B B:ATP1692 2.0 0.4 1.0
CG B:ASN46 2.3 0.4 1.0
O1B B:ATP1692 2.4 0.4 1.0
PB B:ATP1692 2.5 0.4 1.0
HD22 B:ASN46 2.7 0.4 1.0
ND2 B:ASN46 2.9 0.4 1.0
PA B:ATP1692 3.3 0.4 1.0
HA B:ASN46 3.3 0.4 1.0
O3A B:ATP1692 3.4 0.4 1.0
CB B:ASN46 3.5 0.4 1.0
O2G B:ATP1692 3.5 0.4 1.0
HB3 B:ASN46 3.7 0.4 1.0
O3B B:ATP1692 3.8 0.4 1.0
HD21 B:ASN46 3.9 0.4 1.0
CA B:ASN46 3.9 0.4 1.0
HG B:SER108 3.9 0.4 1.0
OD2 B:ASP49 4.0 0.4 1.0
HA3 B:GLY127 4.0 0.4 1.0
O5' B:ATP1692 4.1 0.4 1.0
HB2 B:ASN46 4.4 0.4 1.0
PG B:ATP1692 4.4 0.4 1.0
HG1 B:THR110 4.4 0.4 1.0
HA2 B:GLY127 4.4 0.4 1.0
N B:ASN46 4.4 0.4 1.0
O1A B:ATP1692 4.5 0.4 1.0
H B:ASN46 4.5 0.4 1.0
OG1 B:THR110 4.6 0.4 1.0
O B:ILE126 4.7 0.4 1.0
O B:GLU42 4.7 0.4 1.0
CA B:GLY127 4.8 0.4 1.0
OG B:SER108 4.8 0.4 1.0
HA3 B:GLY132 4.9 0.4 1.0

Reference:

K.A.Verba, R.Y.R.Wang, A.Arakawa, Y.Liu, S.Yokoyama, D.A.Agard. Atomic Structure of HSP90:CDC37:CDK4 Reveals That HSP90 Traps and Stabilizes An Unfolded Kinase. Science V. 352 1542 2016.
ISSN: ISSN 0036-8075
PubMed: 27339980
DOI: 10.1126/SCIENCE.AAF5023
Page generated: Sun Sep 29 04:34:03 2024

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