Magnesium in PDB 5g1x: Crystal Structure of Aurora-A Kinase in Complex with N-Myc

All present enzymatic activity of Crystal Structure of Aurora-A Kinase in Complex with N-Myc:
2.7.11.1;

The structure of Crystal Structure of Aurora-A Kinase in Complex with N-Myc, PDB code: 5g1x was solved by M.W.Richards, S.G.Burgess, R.Bayliss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	74.929 / 1.72
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.520, 86.520, 92.210, 90.00, 90.00, 120.00
R / Rfree (%)	17.62 / 19.51

The binding sites of Magnesium atom in the Crystal Structure of Aurora-A Kinase in Complex with N-Myc (pdb code 5g1x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Aurora-A Kinase in Complex with N-Myc, PDB code: 5g1x:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Aurora-A Kinase in Complex with N-Myc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Aurora-A Kinase in Complex with N-Myc within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1391 b:17.4 occ:1.00 O2B A:ADP1390 2.0 18.6 1.0 OD1 A:ASP274 2.1 18.8 1.0 O A:HOH2116 2.1 19.5 1.0 O A:HOH2117 2.2 18.6 1.0 O A:HOH2185 2.2 24.6 1.0 O A:HOH2026 2.3 19.7 1.0 CG A:ASP274 2.8 17.4 1.0 OD2 A:ASP274 2.8 18.7 1.0 O A:HOH2036 3.1 30.2 1.0 O A:HOH2187 3.1 29.4 1.0 O A:HOH2186 3.1 28.5 1.0 PB A:ADP1390 3.3 17.4 1.0 O3B A:ADP1390 3.6 17.6 1.0 O A:HOH2105 3.8 19.5 1.0 NZ A:LYS162 4.0 18.4 1.0 O A:HOH2074 4.0 23.5 1.0 MG A:MG1392 4.1 16.6 1.0 O1B A:ADP1390 4.2 17.6 1.0 O A:HOH2114 4.2 19.4 1.0 CB A:ASP274 4.2 18.5 1.0 O3A A:ADP1390 4.4 17.6 1.0 OE1 A:GLU181 4.4 25.0 1.0 CA A:GLY276 4.4 18.0 1.0 N A:GLY276 4.5 18.9 1.0 O2A A:ADP1390 4.8 16.9 1.0 CA A:ASP274 4.8 18.3 1.0 PA A:ADP1390 5.0 17.9 1.0 C A:ASP274 5.0 16.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Aurora-A Kinase in Complex with N-Myc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Aurora-A Kinase in Complex with N-Myc within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1392 b:16.6 occ:1.00 OD2 A:ASP274 1.8 18.7 1.0 O2A A:ADP1390 2.0 16.9 1.0 O3B A:ADP1390 2.0 17.6 1.0 O A:HOH2114 2.1 19.4 1.0 OD1 A:ASN261 2.1 18.1 1.0 O A:HOH2112 2.2 19.0 1.0 CG A:ASP274 2.9 17.4 1.0 CG A:ASN261 3.1 19.2 1.0 PB A:ADP1390 3.2 17.4 1.0 PA A:ADP1390 3.3 17.9 1.0 ND2 A:ASN261 3.5 17.0 1.0 O3A A:ADP1390 3.6 17.6 1.0 CB A:ASP274 3.6 18.5 1.0 O2B A:ADP1390 3.7 18.6 1.0 O A:HOH2117 3.8 18.6 1.0 OD1 A:ASP274 3.9 18.8 1.0 O A:HOH2184 4.0 27.3 1.0 MG A:MG1391 4.1 17.4 1.0 O A:HOH2109 4.2 29.8 1.0 O5' A:ADP1390 4.3 19.2 1.0 O1A A:ADP1390 4.3 18.8 1.0 O A:HOH2111 4.3 20.3 1.0 CB A:ASN261 4.5 18.1 1.0 C5' A:ADP1390 4.5 17.8 1.0 O1B A:ADP1390 4.5 17.6 1.0 O A:GLU260 4.6 22.6 1.0 O A:HOH2015 4.6 41.2 1.0 O3' A:ADP1390 4.7 20.4 1.0 CG A:GLU260 4.8 27.7 1.0 CA A:ASN261 4.9 17.5 1.0 OE2 A:GLU260 4.9 43.3 1.0

M.Richards, S.Burgess, E.Poon, A.Carstensen, M.Eilers, L.Chesler, R.Bayliss. Structural Basis of N-Myc Binding By Aurora-A and Its Destabilization By Kinase Inhibitors Proc.Natl.Acad.Sci.Usa V. 113 13726 2016.
ISSN: ISSN 0027-8424
PubMed: 27837025
DOI: 10.1073/PNAS.1610626113